BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0150.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310588|ref|YP_003774680.1| phosphate ABC transporter perme...   558   e-160
gi|300310589|ref|YP_003774681.1| phosphate ABC transporter perme...    61   1e-10

>gi|300310588|ref|YP_003774680.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  558 bits (1439), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/313 (88%), Positives = 297/313 (94%)

Query: 12  LATMRKQRIQDFLFHKVTLIFALSVLVMLGGIIVSLFIGAWPAFHEFGPGFITRVEWDPV 71
           +A MR+QR+QDF FHK+TLIFALSVL+MLGGIIVSL IGA PAF  FGPGFITRVEWDP 
Sbjct: 1   MAVMRRQRLQDFFFHKITLIFALSVLLMLGGIIVSLIIGAAPAFQAFGPGFITRVEWDPT 60

Query: 72  NDQYGAAIAIVGTLTTSLIALLIAFPVSFGIALFLTEICPSRLRRPLGTAVELLAGVPSI 131
           N+++GA IAIVGTL+TS+IALLIAFPVSFGIALFLTEICP++LRRPLGT VELLAGVPSI
Sbjct: 61  NNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICPAKLRRPLGTCVELLAGVPSI 120

Query: 132 IYGMWGLFVFAPLFAEYVQPALKATIGQLPVIGTLFQGPTMGIGILTAGLILSVMIIPFI 191
           IYGMWGLFVFAPLF+EY QP LKAT+GQ+P IG LF GPTMGIGILTAGLILSVMIIPFI
Sbjct: 121 IYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVMIIPFI 180

Query: 192 ASVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGETMAV 251
           +SVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGETMAV
Sbjct: 181 SSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGETMAV 240

Query: 252 TFVIGNSHRLSWSLFAAGNSIASTLANEIAEASSTLHVSSLFALGLILFVITFIVLAVAK 311
           TFVIGNSHRLSWSLF+AGNSIASTLANEIAEASS LHVSSLFALGLILFVITFIVL+ AK
Sbjct: 241 TFVIGNSHRLSWSLFSAGNSIASTLANEIAEASSKLHVSSLFALGLILFVITFIVLSAAK 300

Query: 312 VMLMGMTRKEGAK 324
           +MLMGMTRKEGAK
Sbjct: 301 IMLMGMTRKEGAK 313


>gi|300310589|ref|YP_003774681.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 45/273 (16%)

Query: 1   MQQAQHAHAALLATMRKQRIQDFLFHKVTLIFALSVLVMLGGIIVSLFIGAW-------P 53
           +Q A  A A +    RK+ +Q    H++ ++F  S L M  G    LF+ AW        
Sbjct: 9   VQHADQAQA-MNPVYRKRLMQ----HRMGMLF--SFLAMGLG----LFVLAWILLTLVFK 57

Query: 54  AFHEFGPGFITRVEWDPVNDQYGAAIAIVGTLTTSLIALLIAFPVSFGIALFLTEICP-S 112
                  G +T     P +   G    IVG+L    I+ LI+ P+     ++L E    S
Sbjct: 58  GVAALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEES 117

Query: 113 RLRRPLGTAVELLAGVPSIIYGMWGLFVFAPLFAEYVQPALKATIGQLPVIGTLFQGPTM 172
           +L +      +++   PSI+ G++       ++A YV     A +G        F G   
Sbjct: 118 KLAQVTRFVTDIMLSAPSIVIGLF-------IYAIYV-----ANVGH-------FSG--- 155

Query: 173 GIGILTAGLILSVMIIPFIASVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTG 232
                     +S++ IP +     ++ ++VP+ L+E+A+ LG  RW+V   V L   K G
Sbjct: 156 ----WAGTFAISLIAIPVVVRTTDNMLKLVPSGLREAAFALGAPRWKVAIIVRLRAVKAG 211

Query: 233 VVGGVMLGLGRALGETMAVTFVIGNSHRLSWSL 265
           VV GV+L + R  GET  + F   N+   S ++
Sbjct: 212 VVTGVLLAVARISGETAPLLFTALNNQFFSTNM 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 826,685
Number of extensions: 31021
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)