BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0149.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310589|ref|YP_003774681.1| phosphate ABC transporter perme...   502   e-143
gi|300310588|ref|YP_003774680.1| phosphate ABC transporter perme...    73   2e-14

>gi|300310589|ref|YP_003774681.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  502 bits (1293), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 250/299 (83%), Positives = 272/299 (90%), Gaps = 4/299 (1%)

Query: 6   TPQAGSNKNETAIPLNSPLNPVYRRRLLQHRIGMLFSFLAMAAGLIVLAWILLTLLIKGF 65
           T QAG    + A      +NPVYR+RL+QHR+GMLFSFLAM  GL VLAWILLTL+ KG 
Sbjct: 4   TVQAGVQHADQA----QAMNPVYRKRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGV 59

Query: 66  GALNIGMLTQNTPSPGGDGGGLLNPIIGSLMMVGLGTLISTPIGILAGIYLAEYGEESKL 125
            ALN+G+LT+NTP PG  GGGLLNPI+GSLMMVG+ TLISTPIGILAG+YLAEYGEESKL
Sbjct: 60  AALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKL 119

Query: 126 AQTTRFVTDIMLSAPSIVIGLFVYAIYVANVGHFSGWAGTFAISLIAIPVIVRTTDNMLK 185
           AQ TRFVTDIMLSAPSIVIGLF+YAIYVANVGHFSGWAGTFAISLIAIPV+VRTTDNMLK
Sbjct: 120 AQVTRFVTDIMLSAPSIVIGLFIYAIYVANVGHFSGWAGTFAISLIAIPVVVRTTDNMLK 179

Query: 186 LVPSSLREAAFSLGAPRWKVAMMVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQF 245
           LVPS LREAAF+LGAPRWKVA++VRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQF
Sbjct: 180 LVPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQF 239

Query: 246 FSTNMNRPIANLPVVINQFAMSPYDNWVALAWGGALLITVSVLALNILSRTMFSQRVPG 304
           FSTNMNRPIANLPVVINQFAMSPYDNWV+LAWGGALLIT SVL LN+LSRT+F Q++PG
Sbjct: 240 FSTNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG 298


>gi|300310588|ref|YP_003774680.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 38/251 (15%)

Query: 27  VYRRRLLQ----HRIGMLFSFLAMAAGLIVLAWILLTLLI---KGFGALNIGMLTQNTPS 79
           V RR+ LQ    H+I ++F+     + L++L  I+++L+I     F A   G +T+    
Sbjct: 3   VMRRQRLQDFFFHKITLIFAL----SVLLMLGGIIVSLIIGAAPAFQAFGPGFITRVEWD 58

Query: 80  PGGDGGGLLNPIIGSLMMVGLGTLISTPIGILAGIYLAEYGEESKLAQTTRFVTDIMLSA 139
           P  +  G +  I+G+L    +  LI+ P+     ++L E    +KL +      +++   
Sbjct: 59  PTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICP-AKLRRPLGTCVELLAGV 117

Query: 140 PSIVIG---LFVYAIYVANVGH----------------FSG-------WAGTFAISLIAI 173
           PSI+ G   LFV+A   +  G                 FSG             +S++ I
Sbjct: 118 PSIIYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVMII 177

Query: 174 PVIVRTTDNMLKLVPSSLREAAFSLGAPRWKVAMMVRLRAVKAGVVTGVLLAVARISGET 233
           P I     ++ ++VP+ L+E+A+ LG  RW+V   V L   K GVV GV+L + R  GET
Sbjct: 178 PFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGET 237

Query: 234 APLLFTALNNQ 244
             + F   N+ 
Sbjct: 238 MAVTFVIGNSH 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 869,214
Number of extensions: 33978
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 4
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)