BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0148.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPas... 504 e-144 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 149 2e-37 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 142 3e-35 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 140 1e-34 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 136 2e-33 >gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 504 bits (1299), Expect = e-144, Method: Compositional matrix adjust. Identities = 239/248 (96%), Positives = 245/248 (98%) Query: 14 TIEISQLNFYYGGFQGLKNINLNIFEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAE 73 T+E+SQLNFYYGGFQGLKNINLNI+EGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAE Sbjct: 25 TLEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAE 84 Query: 74 GKIMYAGNNILESGQDLNMLRAKVGMVFQKPTPFPMSVYDNIAFGIRLYENLPKGEMDER 133 GKI+YAGNNILE GQDLNMLRAKVGMVFQKPTPFPMSVYDNIAFGIRLYENLPKGEMDER Sbjct: 85 GKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPMSVYDNIAFGIRLYENLPKGEMDER 144 Query: 134 VEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 193 VEWALNKAALWGEVKDKL+KSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST Sbjct: 145 VEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 204 Query: 194 AKVEELIGELKKDYTIAIVTHNMQQAARCSDYTAYMYLGELMEFGETDQIFMNPARKETQ 253 AKVEELIGELK DYTIAIVTHNMQQAARCSDYTAYMYLGEL+EFGETDQIFMNP RKETQ Sbjct: 205 AKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKETQ 264 Query: 254 DYITGRFG 261 DYITGRFG Sbjct: 265 DYITGRFG 272 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 132/244 (54%), Gaps = 11/244 (4%) Query: 15 IEISQLNFYYGGFQGLKNINLNIFEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 74 IE+ +++ +G + LK+++L++ +G+V IGPSG GKST+LR N + G Sbjct: 2 IEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESY-----ERG 56 Query: 75 KIMYAGNNILESGQDLNMLRAKVGMVFQKPTPFPM-SVYDNIAFGIRLYENLPKGEMDER 133 I+ G + G D++ LR +VGMVFQ+ FP +V +N+ G L + + Sbjct: 57 DILIDGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSE 116 Query: 134 VEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 193 L+K L + + LSGGQQQR+ IAR +A++PE +L DEPTSALDP Sbjct: 117 AMSLLDKVGLAA----RCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELV 172 Query: 194 AKVEELIGELKKD-YTIAIVTHNMQQAARCSDYTAYMYLGELMEFGETDQIFMNPARKET 252 +V ++ L D T+ +VTH M A +D +++ G ++E G Q+ P T Sbjct: 173 GEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHART 232 Query: 253 QDYI 256 QD++ Sbjct: 233 QDFL 236 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 136/244 (55%), Gaps = 11/244 (4%) Query: 15 IEISQLNFYYGGFQGLKNINLNIFEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 74 I+++QL +G L+ I+ I +V IGPSG GKST LR N + ++ ++G Sbjct: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEV-----SDG 56 Query: 75 KIMYAGNNILESGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 133 I G + + +LN LRA++GMVFQ+ FP M+V +N+ + L + E Sbjct: 57 DIFIEGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLV 116 Query: 134 VEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 193 E L K L DK++ LSGGQQQR+ IAR +A++P+V+L DEPTSALDP Sbjct: 117 AEKLLQKVGLL----DKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELV 172 Query: 194 AKVEELIGELKKD-YTIAIVTHNMQQAARCSDYTAYMYLGELMEFGETDQIFMNPARKET 252 +V ++ +L ++ T+ +VTH M A SD ++ G +ME G Q+ +P + T Sbjct: 173 GEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERT 232 Query: 253 QDYI 256 +D++ Sbjct: 233 RDFL 236 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 140 bits (352), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 134/244 (54%), Gaps = 11/244 (4%) Query: 15 IEISQLNFYYGGFQGLKNINLNIFEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 74 +EI+ + +G Q L I+L++ G+V A IG SG GKST+LR N + + G Sbjct: 4 VEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETI-----DGG 58 Query: 75 KIMYAGNNILESGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 133 I AG+ + + L LR VGMVFQ FP ++V +NI R+ + E Sbjct: 59 SITVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARET 118 Query: 134 VEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 193 L + L K + LSGGQQQR+ IAR +A++P+V+L DE TSALDP T Sbjct: 119 AIKVLKQVGL----DHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELT 174 Query: 194 AKVEELIGELKK-DYTIAIVTHNMQQAARCSDYTAYMYLGELMEFGETDQIFMNPARKET 252 A+V +++ EL + T+ +VTH M+ A R +D T +M+ G++ E +++ F +P E Sbjct: 175 AEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEA 234 Query: 253 QDYI 256 + +I Sbjct: 235 RQFI 238 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 134/250 (53%), Gaps = 18/250 (7%) Query: 15 IEISQLNFYYGGFQGLKNINLNIFEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 74 +E+S L +G LK+++L++ +V IGPSG GKST LR N + ++AEG Sbjct: 6 VEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGL------EKAEG 59 Query: 75 -KIMYAGNNILESGQD-----LNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPK 127 + G ++E G+ L++LRA+VGMVFQ FP ++V DNI + + Sbjct: 60 GTVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSR 119 Query: 128 GEMDERVEWALNKAALWGEVKDKLNKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSA 187 ++ L K L + K +LSGGQ+QR+ IAR +A++P+V+L DEPTSA Sbjct: 120 KAAQQQALQLLEKVGLAHKAKAYPG----TLSGGQKQRVAIARALAMEPQVMLFDEPTSA 175 Query: 188 LDPISTAKVEELIGELKKD-YTIAIVTHNMQQAARCSDYTAYMYLGELMEFGETDQIFMN 246 LDP +V ++I L + T+ IVTH M A +D M G ++E G IF Sbjct: 176 LDPELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTA 235 Query: 247 PARKETQDYI 256 P + T+ ++ Sbjct: 236 PQQARTRSFL 245 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 786,378 Number of extensions: 32198 Number of successful extensions: 456 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 133 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)