BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0147.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310591|ref|YP_003774683.1| phosphate transport system regu...   409   e-115

>gi|300310591|ref|YP_003774683.1| phosphate transport system
           regulatory protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  409 bits (1050), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/236 (84%), Positives = 215/236 (91%), Gaps = 1/236 (0%)

Query: 1   MTGDHSSKQYDADLETIRSKVLAMGGMVERQFQDAISAFRNGNLELAARVMKDDESVNRL 60
           MTGDHSSKQYD DLE IRSKVLAMGGMVE QFQDAI+AFR+GNLE+A RVMKDDE+VNRL
Sbjct: 1   MTGDHSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRSGNLEVANRVMKDDEAVNRL 60

Query: 61  EVELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARNAIHLHKRGVGPI 120
           EVELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIAR A+HLHKRG+G I
Sbjct: 61  EVELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAVHLHKRGIGLI 120

Query: 121 NHYETVRVIAEEASEMLRSALDSFARLDTEQATALIAQDASIDHGFRSITRSLATFMMED 180
           +HYETV +IAE+A + LRSALD+FARLD +QA  LI  D  IDHGFRSITRSL TFMMED
Sbjct: 121 SHYETVSLIAEQAMDQLRSALDAFARLDDQQALELIKADERIDHGFRSITRSLITFMMED 180

Query: 181 PRTISASIDTLWVAKAIERIGDHAKNIGEYVIYVVGGKDIRHTDFGSAQISVTEED 236
           PRTIS SIDTLWVAKAIERIGDHAKNI EYV+YVVGGKDIRHTDFGSA+ +V EED
Sbjct: 181 PRTISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRHTDFGSAK-AVQEED 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,324
Number of extensions: 22926
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)