BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0140.p
         (412 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein...   570   e-164

>gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  570 bits (1468), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 313/414 (75%), Positives = 356/414 (85%), Gaps = 4/414 (0%)

Query: 1   MTIQTSSPAVLSDAPAASAPAATQAG--SSPLVLRIVLAVGFAHLINDLIQALLPSIYPM 58
           MT  T+S A    +  A+ PA + AG  + PLV+ I+LA G AHLIND+IQALLPSIYPM
Sbjct: 1   MTSATNSTAAAPSS--ATTPANSPAGLAAQPLVMSIILACGGAHLINDMIQALLPSIYPM 58

Query: 59  LKQNYGLSFTQVGLITLTFQVTASLIQPWIGMYTDKHPKPLLLPCGALFTLLGIVLLSMA 118
           LK +YGLSFTQVGLITLTFQVTASL+QPWIGMYTD+HP+P LLP GA+ TL+GIVLLSMA
Sbjct: 59  LKTSYGLSFTQVGLITLTFQVTASLLQPWIGMYTDRHPQPWLLPSGAVATLVGIVLLSMA 118

Query: 119 GSFGWFLLAAGLIGVGSSTFHPEASRIARMASGGRFGFAQSTFQVGGNAGSALGPLLAAA 178
           GSF  FLLAA L+G+GSSTFHPEASRIARMASGGRFG AQSTFQVGGNAGSA GPLLAAA
Sbjct: 119 GSFPAFLLAAALVGIGSSTFHPEASRIARMASGGRFGLAQSTFQVGGNAGSAFGPLLAAA 178

Query: 179 IVVPFGQPNIAWFCIFAVVAIVVLSRVSNWYRHHLAAGAKKARATVHHHLSSGTVKKALL 238
           IVVPFGQ N+AWF + A+++I+VL+RVS WYR HLAA   + +    H L + TV++AL+
Sbjct: 179 IVVPFGQANVAWFVLLALLSILVLTRVSGWYRSHLAATKGRTKPRATHSLPAATVRRALV 238

Query: 239 VLALLVFSKYFYMAGFTSYFTFYLIDRFHLTVGDSQILLFLFLGAVAAGTFFGGPIGDKI 298
           VLALLVFSKYFYMA FTSYFTFYLIDRFHL+V  SQ+ LFLFLGAVA GTF GGPIGD+I
Sbjct: 239 VLALLVFSKYFYMASFTSYFTFYLIDRFHLSVASSQLYLFLFLGAVAVGTFVGGPIGDRI 298

Query: 299 GRKRVIWFSILGAAPFALLLPHANLFWTGVLCVFVGFILASAFSAIVVYAQELVPGKVGL 358
           GRK VIW SILGAAPFAL+LPHANLFWT VL V +G +++SAFSAIVVYAQELVPGKVG+
Sbjct: 299 GRKLVIWISILGAAPFALMLPHANLFWTAVLSVVIGLVISSAFSAIVVYAQELVPGKVGM 358

Query: 359 ISGVFFGLMFGFGGIGAALLGHLADLYGIANVYLLCSLLPLAGVLTVFLPDLKE 412
           I+GVFFGLMFGFGGIGAALLGHLADLYGIA VY LC+ LPLAG+LTVFLPD++E
Sbjct: 359 IAGVFFGLMFGFGGIGAALLGHLADLYGIAWVYGLCAFLPLAGILTVFLPDVRE 412


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 991,168
Number of extensions: 34928
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 4
Length of query: 412
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,203,190
Effective search space: 389833560
Effective search space used: 389833560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)