BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0139.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310935|ref|YP_003775027.1| alpha/beta hydrolase superfamil...   196   2e-51

>gi|300310935|ref|YP_003775027.1| alpha/beta hydrolase superfamily
           hydrolase/acyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 300

 Score =  196 bits (498), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 115/287 (40%), Positives = 160/287 (55%), Gaps = 2/287 (0%)

Query: 56  IDAGVLNIGYAELGPANGKPVILLHGWPYDIHSFVDVAPLLAAAGHRVIVPHLRGHGSTR 115
           ID   L IG+   GP    PV+LLHGWP D+ ++      L AAG++VI P+LRG+G TR
Sbjct: 10  IDTDKLRIGFEVSGPPEAPPVVLLHGWPDDVRTWDAFLRPLRAAGYQVIRPYLRGYGPTR 69

Query: 116 FLSADAQRNAQQSAVAQDIITLMDALRIPSAVIAGFDWGARTACIMAALWPQRCQALVSV 175
           FLS    R+ Q +A+A D++  +DAL +    + G DWGAR A I AA  P+R    +++
Sbjct: 70  FLSDSTPRSGQLAALASDLMAFVDALGLQRYALIGHDWGARAAYIAAAQTPERISHCITL 129

Query: 176 SGYLMTNLATAKKPLPPKAEFDWWYQFYLTTERGVAGYTQYRREFAELIWKTASPKWNFD 235
           S    TN  T ++ L  +   ++WY ++  T RG A   Q RR  A  +W T SP W F 
Sbjct: 130 SVGWGTN--TPEQQLSLQQSRNYWYHWFFATPRGAAELEQDRRALARFMWNTWSPSWKFA 187

Query: 236 AATFNRSAASFDNPDYVAIVVHNYRWRLGLADGERKYDALERRLADLPVIGIPTITMEGD 295
            + FN +AASFDNPD+VAI +H+YR R G A G+  Y ALE +L   P I +PT+ + G 
Sbjct: 188 ESEFNNTAASFDNPDWVAICLHSYRHRWGFAVGDPAYAALEEQLRQTPRIMVPTLVLHGA 247

Query: 296 ANGAPFLPPALYRNKFAGKYEHRNLSGGIGHNLPQEAPQEFANAVLA 342
            +GA     +  + K       R +  G GH   +E P E    V+A
Sbjct: 248 EDGANHPATSEGKEKLFSNAYRRVVIPGAGHFPQREKPDEVITEVMA 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,053,951
Number of extensions: 45415
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)