BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0133.p (504 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 245 7e-66 gi|300313666|ref|YP_003777758.1| two component sensor histidine ... 224 2e-59 gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbas... 177 2e-45 gi|300311468|ref|YP_003775560.1| oxidative stress resistance two... 115 6e-27 gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 92 1e-19 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 245 bits (625), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 159/446 (35%), Positives = 241/446 (54%), Gaps = 30/446 (6%) Query: 15 RLALILCIGLVLAQTLSFWLTLTERDQATTNVMMGYIEREAASSVALLDHLPPAERAQWL 74 R+ +L G+V+A + WL ER + ++ V +D++PPA+R L Sbjct: 11 RIFFLLLGGIVVAVFATNWLAGNERRNTLRELRFQHLADRVEQIVQAVDNIPPAQRPIVL 70 Query: 75 PRLARRSYEF--------ILGPGITGTPPDARLSKMVAKSIAD--GIGTEYALTVNAVPG 124 + +E +GP + +P + L++M+ + + I + + Sbjct: 71 QAASNFGFEARMVEDMNDAIGPDASPSPSTSPLTEMLQARLGEDRKIAVQRESECPPLRT 130 Query: 125 DKERMQ-------VHLKLTD-----------GTPLTIDLRPMSGVPMSPWLPLVLVLQLI 166 D R +++ L D G P + R G P S + ++L L+ Sbjct: 131 DDARAPRRDTCRVIYISLHDQALMRLRLHQPGEPPALRARAGPGGPASLFGLQYILLFLV 190 Query: 167 VLAACCWLAVRLATRPLHALAAAADTLGPDLKAARLPEDGPSEVARAAKAFNAMQDRIAT 226 ++A WL R+ATRP+ LA AA LG D+ A L E GP+E+ +AA AFNAMQ RI Sbjct: 191 LIAMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRR 250 Query: 227 YMTERMQILAAISHDLQTPITRMRLRVDVMDEGPQHAKLQQDLQEMETLVKEGVAYARTL 286 + R +LAAI+HDLQTP+TRMRLR++ + + KL DL M +V+EG+ AR++ Sbjct: 251 QIQHRTHMLAAITHDLQTPLTRMRLRLEKVSDPGLQQKLIDDLGVMHGMVREGLDLARSM 310 Query: 287 HGAAEAPIRIDPDALLDSLVCDYVDAGNEVSLHGAVGAALVTRPQALKRILGNLVDNALK 346 ++E +D D+LLDS+ D DAG +V+L G+ A ++ +P AL+R L NL+DNA K Sbjct: 311 D-SSEKIQALDIDSLLDSVCADAADAGQDVALQGSTRAFVMAQPGALRRCLTNLIDNACK 369 Query: 347 FGGAAELEVSAQADGVVSIAVLDRGPGIPAESLDAVFEPFVRLETSRNRNTGGTGLGLAI 406 +G +A + ++ + ++I + D+GPGIP L+AVFEPF RLE SR+R+TGGTGLGL I Sbjct: 370 YGKSARVSIALEQQK-IAIRIRDQGPGIPESELEAVFEPFYRLEASRSRDTGGTGLGLTI 428 Query: 407 ARQLTLAMDAKLSLHNRTGGGLEARL 432 A + +L L N GGLE L Sbjct: 429 ALNIAENHHGQLRLRNLAEGGLEVLL 454 >gi|300313666|ref|YP_003777758.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 479 Score = 224 bits (570), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 163/467 (34%), Positives = 235/467 (50%), Gaps = 47/467 (10%) Query: 8 WPRTLFARLALILCIGLVLAQTLSFWLTLTERDQATTNVMMGYIEREAASSVALLDHLPP 67 WP+TL RLALIL G++ AQ L+ + R + A +V +LD P Sbjct: 14 WPQTLSGRLALILVAGMLAAQMLTGTIWYDMRYGTAMEMPTRLAAAHLADAVLILDDAPA 73 Query: 68 AERAQWLPRLARRSYEFILGP-------GITGTPPDARLSKMVAKSIADGIGT------- 113 +R L R + L + G P + + + + D GT Sbjct: 74 TQRQALAHSLTRAQFVLSLPDVVDRADLAVPGLAPASSPTTHADQGVVDLFGTVLQQHAG 133 Query: 114 ---------------------EYALTVNAVPGDKERMQVHLKLTDGTPLTIDLRP----M 148 + L + P + R+ V LK DG+ L D+ M Sbjct: 134 PRPWKMLQLGLDDQHANAESSWWTLLRDEFPHGRFRVLVTLK--DGSWLQADIEEGQAGM 191 Query: 149 SGVPMSP---WLPLVLVLQLIVLAACCWLAVRLATRPLHALAAAADTLGPDLKAARLPED 205 S P S + + L++ + W+AVRLA +PL +A AA+ LG ++++A L D Sbjct: 192 STAPHSAAFDYFMRIYALRIFAVVLIAWMAVRLAMKPLQVMAEAAEKLGGNIRSAPLATD 251 Query: 206 GPSEVARAAKAFNAMQDRIATYMTERMQILAAISHDLQTPITRMRLRVDVMDEGPQHAKL 265 GP EV+ AA+AFNAMQ RI + ER + LAA+SHDL++PITRM+LR +++ + K Sbjct: 252 GPLEVSTAAQAFNAMQRRIIDNIAERTRFLAAVSHDLRSPITRMKLRTEMLPDERGKEKF 311 Query: 266 QQDLQEMETLVKEGVAYARTLHGAAEAPIRIDPDALLDSLVCDYVDAGNEVSLHGAVGAA 325 ++DL EM+ L+ + + + E P ID D+LL+SL D + G EV+L G A Sbjct: 312 RKDLDEMDALISATLNVVQDID-VQERPQLIDLDSLLESLRTDQAEVGGEVTLSGH-AAP 369 Query: 326 LVTRPQALKRILGNLVDNALKFGGAAELEVSAQADGVVSIAVLDRGPGIPAESLDAVFEP 385 L P++L+R L NLV+NA+++G A +++ AD V I V D GPGIP L+ V EP Sbjct: 370 LQGYPRSLRRCLQNLVENAVRYGQRARVQLQDDADQVC-IRVDDDGPGIPEALLERVQEP 428 Query: 386 FVRLETSRNRNTGGTGLGLAIARQLTLAMDAKLSLHNRTGGGLEARL 432 F RLE SRN TGG GLGL+IA + A + L NR GGGL + Sbjct: 429 FYRLERSRNAGTGGFGLGLSIAATVVQAHRGVMKLVNRPGGGLRVEI 475 >gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 478 Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 147/480 (30%), Positives = 232/480 (48%), Gaps = 68/480 (14%) Query: 9 PRTLFARLALILCIGLVLAQT---LSFWLTLTERDQATTNVMMGYIEREAASSVALLDHL 65 P +L RL++++ G+++ Q L + + L + +A T ++ AAS++ L Sbjct: 2 PDSLLGRLSVVMIFGVLVTQVAGGLIWAVQLRSKSEAETRTAAQHLAHSAASAIRYFMTL 61 Query: 66 PPAERAQWLPRLARRSYEFILGPGITGTPPDARLSKMVAKSIADGIGTEYALTVNAVPGD 125 PP R P + ++ E G T +A S + KSI D + A+ V A Sbjct: 62 PPNYR----PLMIQQLREM----GGTRFFINANSSAVAVKSIGDSRLAKLAIDVAAQTLR 113 Query: 126 KE-----RMQVHLKLTDGTPLTIDLRPMSGVP---------MSPWLPLVLVLQL------ 165 ++ ++ DG P+ D ++ +P P VLV+Q+ Sbjct: 114 EDLPFLPEARLAFAWPDGLPVASDGLTVNDLPDNWVQHILMTKPNSAPVLVIQMQVESGR 173 Query: 166 -IVLAAC------------CWL-------------------AVRLATRPLHALAAAADTL 193 I LAA WL VR TRPL ALA AA+ Sbjct: 174 WIYLAALMPNPYFLDSDNPLWLDRLVLQGLSLAAILLLTILVVRWTTRPLAALADAAEAF 233 Query: 194 GPDLKAARLPEDGPSEVARAAKAFNAMQDRIATYMTERMQILAAISHDLQTPITRMRLRV 253 G LPE G E + A+AF+ M++RI Y+ +R ++ +ISHDL+TPITR++LR Sbjct: 234 GKGETVPSLPETGSREYVKTARAFSGMRERIKRYLEDRERLFVSISHDLRTPITRLKLRT 293 Query: 254 DVMDEGPQHAKLQQDLQEMETLVKEGVAYARTLHGAAEAPIRIDPDALLDSLVCDYVDAG 313 ++MD+ DL E++ +VK + + E + DAL+ ++ D AG Sbjct: 294 ELMDDDAMRTDFHDDLDELDMMVKGALQSVKD-SDIHENRTEVRLDALVLRMIRDARLAG 352 Query: 314 NEVSLHGAVGAALVTRPQALKRILGNLVDNALKFGGAAELEV--SAQADG-VVSIAVLDR 370 +E++ + G ++ +P ALKR +GNL DNAL +G E+ + S A+G +V I + D Sbjct: 353 HEIAFTPS-GINVIAKPLALKRAIGNLFDNALYYGQKVEISIRPSPGAEGDLVEIEIRDH 411 Query: 371 GPGIPAESLDAVFEPFVRLETSRNRNTGGTGLGLAIARQLTLAMDAKLSLHNRTGGGLEA 430 GPG+P +++ +F+P+VRLE R +N+GG GLGL I+R + A +L L N GGL A Sbjct: 412 GPGVPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLMA 471 >gi|300311468|ref|YP_003775560.1| oxidative stress resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 455 Score = 115 bits (289), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 15/243 (6%) Query: 202 LPEDGPSEVARAAKAFNAMQDRIATYMTERMQILAAISHDLQTPITRMRLRVDVMDEGPQ 261 LPE GP+E+ A ++FN M + ++R ILA ISHDL+TP+ RM+L V++ + + Sbjct: 207 LPESGPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTPLARMQLEVEMANLSDE 266 Query: 262 -HAKLQQDLQEMETLVKEGVAYARTLHGAAEAPIRIDPDALLDSLVCDYVDAGNEVSLHG 320 + DL +M++++ + + YA+ ++ I + D L D V +++ +H Sbjct: 267 ARDGMHSDLAQMDSIIGQFLDYAKPFDTSSLETIDL-ADVLQD--VAGNASRLSDIRVHT 323 Query: 321 AV--GAALVTRPQALKRILGNLVDNALKFGGA-----AELEVSAQADG-VVSIAVLDRGP 372 + + L R+ NLV+NA ++G AE+++ ++ +G V + V D GP Sbjct: 324 QITPDTQVAGNGTELARVFSNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGP 383 Query: 373 GIPAESLDAVFEPFVRLETSRNRNTGGTGLGLAIARQLTLAMDAKLSL--HNRTGGGLEA 430 G+P + + PF RL+T+R + G+GLGLAI ++ L + KL L H T GL Sbjct: 384 GVPVNECERLLRPFTRLDTARGQ-ANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGLLV 442 Query: 431 RLT 433 ++T Sbjct: 443 QIT 445 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 122/258 (47%), Gaps = 27/258 (10%) Query: 182 PLHALAAAADTLGPDLKAARLPEDGPSEVARAAKAFNAMQDRIATYMTERMQILAAISHD 241 PL AL D+ G D P EV A N + R+ M + + +A +H+ Sbjct: 179 PLQALRQEIDSRGEDDLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHE 238 Query: 242 LQTPITRMRLRVDVMDEGPQH-------AKLQQDLQEMETLVKEGVAYAR--TLHGAAEA 292 L+TP+T + L+ + + P +L+ LQ LV + +A AR T GAA Sbjct: 239 LRTPLTALSLQAERLGRAPMSETARERLTRLETGLQRARQLVTQLLALARAQTPAGAALQ 298 Query: 293 P------IRIDPDALLDSLVCDYVDAGNEVSLHGAVGAALVTRPQALKRILGNLVDNALK 346 P +R + LL C +D G L G A ++T+PQ L ++L NL+DNA+ Sbjct: 299 PCSLHQVLREVIEELLPLAQCKQIDLG----LDGERDACVLTQPQELAQLLRNLIDNAIA 354 Query: 347 F---GGAAELEVSAQADGVVSIAVLDRGPGIPAESLDAVFEPFVRLETSRNRNTGGTGLG 403 + GGA L + A V++ + D GPGI A + VF+PF R++ S G+GLG Sbjct: 355 YTPAGGAVSLRMERHAQ-WVALEICDTGPGIAASERERVFQPFYRIDPSGQ----GSGLG 409 Query: 404 LAIARQLTLAMDAKLSLH 421 LAI + + + L L Sbjct: 410 LAIVQSIARRLGVTLRLE 427 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,484,878 Number of extensions: 60374 Number of successful extensions: 341 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 34 Length of query: 504 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 415 Effective length of database: 1,198,455 Effective search space: 497358825 Effective search space used: 497358825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)