BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0132.p (568 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 621 e-179 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 576 e-165 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 510 e-146 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 466 e-132 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 453 e-128 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 621 bits (1602), Expect = e-179, Method: Compositional matrix adjust. Identities = 350/487 (71%), Positives = 400/487 (82%), Gaps = 3/487 (0%) Query: 1 MNFFANMNISKRLNLGFAIILFSAIAVIALSIWRLHEVAETTQSMMEKPLAKERLVSDWY 60 M +FANM I +RL LGFA+IL +A V+ALSIWRL +A T MM +PL KERLVSDWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 RTIHTSVRRTTAIAKSSDPSLSAFFAEDAATATKLSNEQQKTLEGLLGSDKEKALFAQLA 120 RTIHTSVRRTTAIAKSSDPSL+AFFA+DAA A+++S EQQK +E L+ SD+EKA+F +L Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 TVRKSYIVARDAISKAKADGNVEEAARILAKDFPVAAKGYLDALQQLLDLQRSGIDEIAA 180 VRK YI RDAISKAKA+G EEAA+ILA F VA KGYLD LQQLL LQR+ ID++AA Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 SIQDQYKQSRNLLIAFGALLFVAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSRID- 239 IQ Y++SRNL++A L V GW+FA LAL I RPL+QA+ +AE VAAGDL+ RID Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 240 --TSRKDETGKLLLALKTMNDNLQRIVGQVRTGTDTISTASAEIASGNMDLSTRTEQQAG 297 +R DETGKL+ AL M NL RIVGQVR GTD I+TAS EIA+GN+DLS RTE+QAG Sbjct: 241 RLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAG 300 Query: 298 SLEETASAMEQLTSTVKQNADNARQANQLAVSASEVAVQGGSVVGQVVDTMGAINASSKK 357 +LEETASAME+LTSTV QNADNARQANQLA SAS VA QGG VV QV+ TMG+IN SS+K Sbjct: 301 ALEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 Query: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKEL 417 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK L Sbjct: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKAL 420 Query: 418 ISDSVDKVDSGSKLVEQAGATMAEVVASVKRVTDIVGEISSASQEQSEGIEQVNRAIAQM 477 I DSV KV SGS+LV +AG+TM EVVASV++V DIV EIS+AS EQS+GI QVN AI M Sbjct: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDM 480 Query: 478 DETTQQN 484 D+TTQQN Sbjct: 481 DQTTQQN 487 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 576 bits (1485), Expect = e-165, Method: Compositional matrix adjust. Identities = 305/484 (63%), Positives = 373/484 (77%) Query: 1 MNFFANMNISKRLNLGFAIILFSAIAVIALSIWRLHEVAETTQSMMEKPLAKERLVSDWY 60 MN NMNI +RL LGFA+IL +I + + +WRL VA+ T+ MM +PL ERL++DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 RTIHTSVRRTTAIAKSSDPSLSAFFAEDAATATKLSNEQQKTLEGLLGSDKEKALFAQLA 120 + +RRT AIAKSSDP+L +FA + A ++K S E QK +E LL + +EKALF ++ Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 TVRKSYIVARDAISKAKADGNVEEAARILAKDFPVAAKGYLDALQQLLDLQRSGIDEIAA 180 +RK Y+ +RD I+KAKA GN EEA RIL + F A Y D +++L+D QR +D+ A Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 SIQDQYKQSRNLLIAFGALLFVAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSRIDT 240 I +SR L++ L+ + G VFA L L I +PL +A+ ++ VA GDLSS I Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 241 SRKDETGKLLLALKTMNDNLQRIVGQVRTGTDTISTASAEIASGNMDLSTRTEQQAGSLE 300 + +DETG+LL +LK MN +L+ IV VR+GTDTISTAS+EIA+GN+DLS+RTEQQA SL Sbjct: 241 TSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLA 300 Query: 301 ETASAMEQLTSTVKQNADNARQANQLAVSASEVAVQGGSVVGQVVDTMGAINASSKKIVD 360 ETASAME+L STV+QNADNARQA+QLA SAS VA QGG VV QVVDTMGAINASS+KIVD Sbjct: 301 ETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIKELI+D Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIND 420 Query: 421 SVDKVDSGSKLVEQAGATMAEVVASVKRVTDIVGEISSASQEQSEGIEQVNRAIAQMDET 480 SV KVD GS+LVEQAG TM EVV+SV+RVTDIV EIS+AS EQ+ GIEQ+N AI QMD+ Sbjct: 421 SVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQV 480 Query: 481 TQQN 484 TQQN Sbjct: 481 TQQN 484 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 510 bits (1314), Expect = e-146, Method: Compositional matrix adjust. Identities = 280/479 (58%), Positives = 339/479 (70%) Query: 6 NMNISKRLNLGFAIILFSAIAVIALSIWRLHEVAETTQSMMEKPLAKERLVSDWYRTIHT 65 N+ I RL +GF +L ++AL +WRL + + T M L KER W+ I Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKE 62 Query: 66 SVRRTTAIAKSSDPSLSAFFAEDAATATKLSNEQQKTLEGLLGSDKEKALFAQLATVRKS 125 + RT A+ KS D + A+F + + ++ QK +E + +EK LF ++ +R + Sbjct: 63 NGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLRAA 122 Query: 126 YIVARDAISKAKADGNVEEAARILAKDFPVAAKGYLDALQQLLDLQRSGIDEIAASIQDQ 185 Y R +I K G+ A + Y D + + D Q+ ID+ AA+I Sbjct: 123 YRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINRD 182 Query: 186 YKQSRNLLIAFGALLFVAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSRIDTSRKDE 245 Y+ R++L+A GA+ V G AW L SI RPL QA+ IAETVAAGDL+SRID+S +DE Sbjct: 183 YRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDE 242 Query: 246 TGKLLLALKTMNDNLQRIVGQVRTGTDTISTASAEIASGNMDLSTRTEQQAGSLEETASA 305 TGKLL ALKTMN NL IVG+VR GT+TI+TAS EIA+GN+DLS RTE QAGSLEETASA Sbjct: 243 TGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETASA 302 Query: 306 MEQLTSTVKQNADNARQANQLAVSASEVAVQGGSVVGQVVDTMGAINASSKKIVDIISVI 365 MEQLTSTVKQNADNARQAN+LA SAS+VA QGG+VV QVV TMGAI+ASS+KI DII VI Sbjct: 303 MEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGVI 362 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSVDKV 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK+LI DSV+KV Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKV 422 Query: 426 DSGSKLVEQAGATMAEVVASVKRVTDIVGEISSASQEQSEGIEQVNRAIAQMDETTQQN 484 D GS+LV +AG TM EVV SV RVT +V EI+ ASQEQS+GIEQVN AI +DETTQQN Sbjct: 423 DDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQN 481 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 466 bits (1199), Expect = e-132, Method: Compositional matrix adjust. Identities = 254/482 (52%), Positives = 342/482 (70%) Query: 3 FFANMNISKRLNLGFAIILFSAIAVIALSIWRLHEVAETTQSMMEKPLAKERLVSDWYRT 62 ++ I RL GFA++L ++ V A+ IWRL VA TQ MM+ PL ERLVS W Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 63 IHTSVRRTTAIAKSSDPSLSAFFAEDAATATKLSNEQQKTLEGLLGSDKEKALFAQLATV 122 + +++RTT + KS DP L AF A++AA ++K S + K +E LL S++EK +FA + Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 123 RKSYIVARDAISKAKADGNVEEAARILAKDFPVAAKGYLDALQQLLDLQRSGIDEIAASI 182 RK ++ RD I AK G+ + + K + AK DA++ LLD +R+ ID+I+A I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 183 QDQYKQSRNLLIAFGALLFVAGWVFAWRLALSIIRPLKQALGIAETVAAGDLSSRIDTSR 242 Q S++ ++ ++ + G FA L SI RP+ AL I++ VAAGDL+SR Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 243 KDETGKLLLALKTMNDNLQRIVGQVRTGTDTISTASAEIASGNMDLSTRTEQQAGSLEET 302 +DE G+L+ +L+ M++ L +V VR G D+I+ AS EIA+GN+DLS RTE+QAG+LE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 303 ASAMEQLTSTVKQNADNARQANQLAVSASEVAVQGGSVVGQVVDTMGAINASSKKIVDII 362 A+++E+LTS+V+ N+DNA QAN+L +A+ VA QGG+V+ Q++ TM IN SS+KIVDII Sbjct: 301 AASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDII 360 Query: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKELISDSV 422 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK+LI DSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 Query: 423 DKVDSGSKLVEQAGATMAEVVASVKRVTDIVGEISSASQEQSEGIEQVNRAIAQMDETTQ 482 KV +GS LVEQAG TM EVV SV+ +VGEIS+AS++Q+EGI QVN+A+ QMD TQ Sbjct: 421 GKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQ 480 Query: 483 QN 484 QN Sbjct: 481 QN 482 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 453 bits (1165), Expect = e-128, Method: Compositional matrix adjust. Identities = 270/504 (53%), Positives = 342/504 (67%), Gaps = 40/504 (7%) Query: 1 MNFFANMNISKRLNLGFAIILFSAIAVIALSIWRLHEVAETTQSMMEKPLAKERLVSDWY 60 M +F ++ IS++L F +++ A+ SI +L +V A + ++W Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNS----------ASTEISTNWL 50 Query: 61 RTIHTSVRRTTAIAKSSDPSLSAFFAEDAATATKLSNEQQKTLEGL----------LGSD 110 +I T R A+++ L A+DA ++ Q + L + Sbjct: 51 PSIRTLARLQLAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEP 110 Query: 111 KEKALFAQLATVRKSYIVARDAISKAKADGNVEEAARILAKDFPVAAKGYLDALQQLLDL 170 +EKA++ ++ + +++ D I G EEA + + + K Y +LQQ+ L Sbjct: 111 EEKAIYPEVEKLIATFVSEHDKIIALSRQGKDEEARNLQRGE---STKAYRTSLQQIDKL 167 Query: 171 QRSGIDEIAASIQDQ-----YKQSRNLLIA-----FGALLFVAGWVFAWRLALSIIRPLK 220 + +++ A I ++ Y Q+R +I G + +A WV RL I RPL+ Sbjct: 168 --AAVNDKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVS--RL---IARPLE 220 Query: 221 QALGIAETVAAGDLSSRIDTSRKDETGKLLLALKTMNDNLQRIVGQVRTGTDTISTASAE 280 +A+ +A+ VA GDL++RI+ + KDETG+LL+ALK+MND+L IVGQVR GT TI+TAS E Sbjct: 221 EAVSVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTE 280 Query: 281 IASGNMDLSTRTEQQAGSLEETASAMEQLTSTVKQNADNARQANQLAVSASEVAVQGGSV 340 IASGN+DLS+RTE+QA SLEETASAME+LTSTVKQNADNARQANQLAVSASEVA QGG+V Sbjct: 281 IASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAV 340 Query: 341 VGQVVDTMGAINASSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 400 V QVVDTMG+INASS+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 341 VNQVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 400 Query: 401 RSLAQRSASAAKEIKELISDSVDKVDSGSKLVEQAGATMAEVVASVKRVTDIVGEISSAS 460 RSLAQRSA AAKEIKELI SV +VD GSKLVE+AG TM+EVV SV+RVTDIVGEISSAS Sbjct: 401 RSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSAS 460 Query: 461 QEQSEGIEQVNRAIAQMDETTQQN 484 QEQSEGIEQVN AIAQMDE TQQN Sbjct: 461 QEQSEGIEQVNLAIAQMDEVTQQN 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,173,277 Number of extensions: 38398 Number of successful extensions: 510 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 370 Number of HSP's successfully gapped: 72 Length of query: 568 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 478 Effective length of database: 1,193,720 Effective search space: 570598160 Effective search space used: 570598160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)