BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0127.p (271 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 179 2e-46 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 137 6e-34 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 135 5e-33 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 116 2e-27 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 101 6e-23 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 179 bits (454), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/201 (51%), Positives = 144/201 (71%) Query: 3 AIAKSTDPALAPFFAKEDAASSKISTELLKKLQPILESEQELTLFKKIETQRSLYVAARD 62 AIAKS+DPAL P+FA E AASSK S E K+++ +L + +E LF+KI R LY+++RD Sbjct: 72 AIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKLYLSSRD 131 Query: 63 QMRKAKAAGDLDEANRLLESAFMPRANDLKDALQNLLTMQRKSIDDTATDIERMAQTGRT 122 ++ KAKAAG+ +EA R+L+ F+P A +D ++ L+ QRK +DDTA +I+ +A RT Sbjct: 132 EINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREIDAIAAKSRT 191 Query: 123 LLIVLGVLILLFGVSSAWYLTVNITRPLTVAVGVARSIADGDLTAHIEVRSKDEVGMLLS 182 L++VL LILL G+ A YLT+ IT+PL AV V+R +A+GDL++ I V S+DE G LL Sbjct: 192 LILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQ 251 Query: 183 ALKDMNGSLLKIVGDVRGGTD 203 +LKDMN SL IV +VR GTD Sbjct: 252 SLKDMNQSLRGIVSNVRSGTD 272 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 137 bits (346), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 3 AIAKSTDPALAPFFAKE-DAASSKISTELLKKLQPILESEQELTLFKKIETQRSLYVAAR 61 A+ KS D A +F K+ DA S++IS +L K+++ + +E LF ++ R+ Y A R Sbjct: 69 AVMKSDDDAFQAYFQKQIDAQSARIS-QLQKEVEAAITDAEEKRLFDEVGKLRAAYRATR 127 Query: 62 DQMRKAKAAGDLDEANRLLESAFMPRANDLKDALQNLLTMQRKSIDDTATDIERMAQTGR 121 + K AGD A + ++ + +D D + Q++ ID TA I R ++GR Sbjct: 128 QSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINRDYRSGR 187 Query: 122 TLLIVLGVLILLFGVSSAWYLTVNITRPLTVAVGVARSIADGDLTAHIEVRSKDEVGMLL 181 ++L+ LG + ++ G + AW LT +ITRPL AV +A ++A GDLT+ I+ S+DE G LL Sbjct: 188 SMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLL 247 Query: 182 SALKDMNGSLLKIVGDVRGGTD 203 +ALK MNG+LL IVG VR GT+ Sbjct: 248 AALKTMNGNLLDIVGRVRMGTE 269 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 135 bits (339), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 122/203 (60%) Query: 2 TAIAKSTDPALAPFFAKEDAASSKISTELLKKLQPILESEQELTLFKKIETQRSLYVAAR 61 T + KS DP L F AKE AASSK S + LK ++ +L SE+E +F I R ++ R Sbjct: 69 TTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVARKQFLTIR 128 Query: 62 DQMRKAKAAGDLDEANRLLESAFMPRANDLKDALQNLLTMQRKSIDDTATDIERMAQTGR 121 DQ+ AK GD + L + ++ A +DA++ LL +R ID + I++ A + + Sbjct: 129 DQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQQDASSSQ 188 Query: 122 TLLIVLGVLILLFGVSSAWYLTVNITRPLTVAVGVARSIADGDLTAHIEVRSKDEVGMLL 181 +++L V+ILL G++ A LT +ITRP+ VA+ +++ +A GDLT+ + +DE+G L+ Sbjct: 189 HQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMGRDELGQLV 248 Query: 182 SALKDMNGSLLKIVGDVRGGTDA 204 ++L+ M+ L +V VR G D+ Sbjct: 249 ASLQGMSERLHGVVSTVRHGADS 271 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 127/206 (61%), Gaps = 3/206 (1%) Query: 2 TAIAKSTDPALAPFFAKEDAASSKISTELLKKLQPILESEQELTLFKKIETQRSLYVAAR 61 TAIAKS+DP+LA FFA + AA+S++STE K ++ ++ES+QE +F K+ R Y+ R Sbjct: 71 TAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKDYIKYR 130 Query: 62 DQMRKAKAAGDLDEANRLLESAFMPRANDLKDALQNLLTMQRKSIDDTATDIERMAQTGR 121 D + KAKA G +EA ++L F D LQ LLT+QR +ID A I+ + + R Sbjct: 131 DAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTVYRESR 190 Query: 122 TLLIVLGVLILLFGVSSAWYLTVNITRPLTVAVGVARSIADGDLTAHIEVR---SKDEVG 178 L++ L L ++ G A L + ITRPL AV VA ++A GDLT I+ R DE G Sbjct: 191 NLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAARGDETG 250 Query: 179 MLLSALKDMNGSLLKIVGDVRGGTDA 204 L+ AL M G+L +IVG VRGGTDA Sbjct: 251 KLMHALHAMTGNLARIVGQVRGGTDA 276 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 103/197 (52%) Query: 8 TDPALAPFFAKEDAASSKISTELLKKLQPILESEQELTLFKKIETQRSLYVAARDQMRKA 67 TDPA K + S +T+L +L ++ + + K+ R Y A R Q+ K Sbjct: 76 TDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTETRKSYAALRKQIDKL 135 Query: 68 KAAGDLDEANRLLESAFMPRANDLKDALQNLLTMQRKSIDDTATDIERMAQTGRTLLIVL 127 +++GD D A +L+ S +P L L Q+K +D + E +T R ++++ Sbjct: 136 QSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQAEAAYETTRMIMVIA 195 Query: 128 GVLILLFGVSSAWYLTVNITRPLTVAVGVARSIADGDLTAHIEVRSKDEVGMLLSALKDM 187 GVL F AW ++ +ITRPL+ AV VA ++A GDLTA I S DE G LL AL M Sbjct: 196 GVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAHSNDETGRLLQALAAM 255 Query: 188 NGSLLKIVGDVRGGTDA 204 N L IV +VR GTD+ Sbjct: 256 NQKLKAIVLEVRRGTDS 272 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 730,253 Number of extensions: 25496 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 34 Length of query: 271 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 187 Effective length of database: 1,222,130 Effective search space: 228538310 Effective search space used: 228538310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)