BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0126.p (197 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 250 7e-68 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 241 3e-65 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 229 2e-61 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 227 5e-61 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 224 4e-60 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 250 bits (638), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 133/171 (77%), Positives = 151/171 (88%) Query: 1 VISTMRSIDASSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 60 VI TM SIDASSKKIVDIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSL Sbjct: 345 VIETMGSIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSL 404 Query: 61 AQRSAAAAKEIKQLIGDSVDKVGAGTKLVEKAGVTMDEVVASVKRVTDVVSEISAASREQ 120 AQRSA AAKEIK LI +SV +VG G+ LV+KAGVT+ EVV+SV+RVTDV+SEISAAS EQ Sbjct: 405 AQRSATAAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQ 464 Query: 121 SEGIDQVKHAVTQMDGVTQQNAALVEEAAAAAQSLQQQAANLARIVSVFKL 171 ++GI+QV A+TQMD VTQQNAALVEEAA+A+QSL QA L+ +V VF+L Sbjct: 465 TQGIEQVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 241 bits (615), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 139/192 (72%), Positives = 164/192 (85%), Gaps = 5/192 (2%) Query: 1 VISTMRSIDASSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 60 V+ TM +I+ASS+KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+L Sbjct: 344 VVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTL 403 Query: 61 AQRSAAAAKEIKQLIGDSVDKVGAGTKLVEKAGVTMDEVVASVKRVTDVVSEISAASREQ 120 AQRSA+AAKEIK+LI DSV KV G++LVE+AG TM EVV+SV+RVTD+V+EISAAS EQ Sbjct: 404 AQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQ 463 Query: 121 SEGIDQVKHAVTQMDGVTQQNAALVEEAAAAAQSLQQQAANLARIVSVFKLGQELSTGNA 180 + GI+Q+ A+TQMD VTQQNAALVEEAAAAA S+Q QA L ++VSVF+L + Sbjct: 464 THGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSER-----E 518 Query: 181 PRVRREIDITAA 192 P VRREID+T + Sbjct: 519 PLVRREIDVTPS 530 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/203 (66%), Positives = 164/203 (80%), Gaps = 7/203 (3%) Query: 1 VISTMRSIDASSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 60 V+ TM+SI+ASS+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL Sbjct: 350 VVQTMQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 409 Query: 61 AQRSAAAAKEIKQLIGDSVDKVGAGTKLVEKAGVTMDEVVASVKRVTDVVSEISAASREQ 120 AQRSA+AAKEIK LIGDSV KV G+KLVE+AG TM ++V S++RVTDV++EI+ A+REQ Sbjct: 410 AQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQ 469 Query: 121 SEGIDQVKHAVTQMDGVTQQNAALVEEAAAAAQSLQQQAANLARIVSVFKLGQELSTGNA 180 S GI+QV A+ Q+D +TQQNAALVE+AAAAA+SLQ+QAA L ++VSVF+L + G+ Sbjct: 470 SSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGHT 529 Query: 181 -------PRVRREIDITAAPARL 196 V R ID+T L Sbjct: 530 AAPAHAPAAVERVIDVTPGAPEL 552 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 227 bits (579), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 138/171 (80%), Positives = 154/171 (90%) Query: 1 VISTMRSIDASSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 60 V+ TM I SS +I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL Sbjct: 344 VVQTMEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 403 Query: 61 AQRSAAAAKEIKQLIGDSVDKVGAGTKLVEKAGVTMDEVVASVKRVTDVVSEISAASREQ 120 AQRSA+AAKEIKQLI DSV+KVGAG++LVE+AG TM EVVASV+RVTDVV+EISAAS EQ Sbjct: 404 AQRSASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQ 463 Query: 121 SEGIDQVKHAVTQMDGVTQQNAALVEEAAAAAQSLQQQAANLARIVSVFKL 171 S GI+++ A+TQMD VTQQNAALVEEAAAAAQSLQ QAA L+++VSVFKL Sbjct: 464 STGIEEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 224 bits (571), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 143/197 (72%), Positives = 163/197 (82%), Gaps = 2/197 (1%) Query: 1 VISTMRSIDASSKKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 60 VISTM SI+ SS+KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL Sbjct: 347 VISTMGSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 406 Query: 61 AQRSAAAAKEIKQLIGDSVDKVGAGTKLVEKAGVTMDEVVASVKRVTDVVSEISAASREQ 120 AQRSA+AAKEIK LI DSV KVG+G++LV +AG TMDEVVASV++V D+VSEISAAS EQ Sbjct: 407 AQRSASAAKEIKALIDDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQ 466 Query: 121 SEGIDQVKHAVTQMDGVTQQNAALVEEAAAAAQSLQQQAANLARIVSVFKLGQELSTGNA 180 S+GI QV A+T MD TQQNAALVEEAAAAA+++Q+QAA L+ +VS FKL + A Sbjct: 467 SDGISQVNLAITDMDQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKLLGQDQIAYA 526 Query: 181 PRVRREIDITAAPARLR 197 P R +DIT LR Sbjct: 527 P--RSAVDITPPLPALR 541 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 321,821 Number of extensions: 8533 Number of successful extensions: 207 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 71 Length of query: 197 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 117 Effective length of database: 1,241,070 Effective search space: 145205190 Effective search space used: 145205190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)