BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0117.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313540|ref|YP_003777632.1| transcription regulator protein... 82 4e-17 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 73 2e-14 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 63 2e-11 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 63 2e-11 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 60 1e-10 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 82.0 bits (201), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 77/144 (53%) Query: 11 EAIMNGRFKPGEKLSERELCELLDVSRPSLREALRKLEAEKLITMVLHRGPVVSSISVSE 70 +AIM R P KL+E+ LC++ D +R ++R+ L +L AE ++ + +RG ++S S +E Sbjct: 37 DAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAFIASPSPAE 96 Query: 71 ARDLYAIRGLLESHAASEFAKLASDDTVAALGVAVKNLNQEAASGDRKRLLAAKADFYDV 130 RD++ +R +LE + A +A L V+ +GDR R + A F+ Sbjct: 97 VRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLA 156 Query: 131 ILNGCGNQLIKEMLLSLLSRINLL 154 + GN L+ E L L+SR L+ Sbjct: 157 LAELTGNALLVETLRKLVSRTTLM 180 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 3/198 (1%) Query: 2 RSQVENYLREAIMNGRFKPGEKLSERELCELLDVSRPSLREALRKLEAEKLITMVLHRGP 61 + +V LR+ ++ G++KPG +L E L L VSR +R ALR+L + L T +G Sbjct: 5 KEKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGI 64 Query: 62 VVSSISVSEARDLYAIRGLLESHAASEFAKLASDDTVAALGVAVKNLNQEAASG---DRK 118 V++ S + + + +R LLE +AAS A+ + +A L + + + Q SG + Sbjct: 65 HVAAWSDWDIEETFQLRMLLEPYAASLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVE 124 Query: 119 RLLAAKADFYDVILNGCGNQLIKEMLLSLLSRINLLRSTSFSHADRLSESLKEIDQLYAC 178 ++ AA + F+ IL + ++ ML +++ ++RS L +SL L Sbjct: 125 KIQAANSIFHRTILEYSASPRLRAMLETIIDMPIIVRSFHLYEKSELEQSLHHHQDLLLA 184 Query: 179 IKARNATAAGKAARLHIQ 196 ++AR+A A + +LH++ Sbjct: 185 MQARDAELARQVMQLHLR 202 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 13 IMNGRFKPGEKLSERELCELLDVSRPSLREALRKLEAEKLITMVLHRGPVVSSISVSEAR 72 I R PG KL E L + VSR +R AL L +KL+ ++ +G VS +V E R Sbjct: 22 IAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGAFVSKPTVEETR 81 Query: 73 DLYAIRGLLESHAASEFAKLASDDTVAALGVAVKNLNQEAASGD----RKRLLAAKADFY 128 +++ +R LES EF A+ + A L ++ L ++A S D R LL +DF+ Sbjct: 82 NIFFVRRTLESAMVREFVARATPEDYARLEAHLE-LERQAVSDDNMQVRSTLL---SDFH 137 Query: 129 DVILNGCGNQLIKEMLLSLLSRINLL 154 ++ GN ++ ++L L R L+ Sbjct: 138 ILLARIVGNDVLTDILEKLAGRSALI 163 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 9/171 (5%) Query: 1 LRSQVENYLREAIMNGRFKPGEKLSERELCELLDVSRPSLREALRKLEAEKLITMVLHRG 60 L V ++ AI+ G PG K+SE EL +SR LREA+ +LE + L+ V H G Sbjct: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 Query: 61 PVVSSISVSEARDLYAIRGLLESH----AASEFAKLASDDTVAALGVAVKNLNQEAASGD 116 V S+++ +L+ IR LE AA ++ D+ L K+ +A G Sbjct: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGY 136 Query: 117 RKRLLAAKADFYDVILNGCGNQLIKEML---LSLLSRINLLRSTSFSHADR 164 ++ DF+ I+ GNQ++ +L L L+R+ ++ ++ H R Sbjct: 137 YQQ--EGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPR 185 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 3 SQVENYLREAIMNGRFKPGEKLSERELCELLDVSRPSLREALRKLEAEKLITMVLHRGPV 62 SQ+ + EAI+ + PG +L E++L +L VSR +REAL L A ++T+ RG Sbjct: 11 SQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWF 70 Query: 63 VSSISVSEARDLYAIRGLLESHAASEFAKLASDDTVAALGVAVKNLNQEAAS------GD 116 V + ++AR+ + R ++E + DT A+G +++ +E A+ G Sbjct: 71 VIEPTPAQAREAFEARRVIELGLLRQARLRPVGDT--AIGQLREHIAREEAAIAGADVGA 128 Query: 117 RKRLLAAKADFYDVILNGCGNQLIKEMLLSLLSRINL 153 R LL DF+ + GN L+ E L L +R L Sbjct: 129 RSYLL---GDFHVCLAECLGNSLLAETLRDLTARTTL 162 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 485,148 Number of extensions: 15253 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 9 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)