BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0116.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC t... 86 3e-18 gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC t... 84 1e-17 gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t... 82 4e-17 gi|300311113|ref|YP_003775205.1| branched-chain amino acid ABC t... 77 2e-15 gi|300311772|ref|YP_003775864.1| branched-chain amino acid ABC t... 65 4e-12 >gi|300310991|ref|YP_003775083.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 373 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 10/229 (4%) Query: 15 QQKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAA 74 +T+ + + P++GA AQ+G + G ++INAAGG G K + ++ D Sbjct: 25 HAETVKIAIAGPMTGAVAQYGDMVKAGALTAIEQINAAGGAN---GNKFEAVMMDDACEP 81 Query: 75 TTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFS-DQIT-GRGFKN 132 A VA ++++Q ++G S T+ S++ E GV ++T S + Q+T + K Sbjct: 82 KQAVAVANKIVSQG-IKYVIGHVCSGSTIPASDIYENEGVVMITPSATAPQLTEAKPHKF 140 Query: 133 VFQVVSKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEI 192 +F+ + + G Y + K K+A++++ +YG A+ ++ A AAK + Sbjct: 141 IFRTIGRDDQQGPAAARYVIE----KLKPKKVAVLHDKQSYGQGVASSVKAALDAAKVPV 196 Query: 193 VMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKI 241 V+ E G SD + ++ KL++ G V+ Y + LI+R R+Q I Sbjct: 197 VVFEGINAGDSDYSAIVTKLKSQGVDFVYFGGYHPEMGLIMRQAREQGI 245 >gi|300312761|ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 14/228 (6%) Query: 16 QKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIK--LIVADSTSA 73 Q+ + + + PLSG NA G ++ G + DE+NA G ++GG K+K L+ D S Sbjct: 25 QEVVKIAHVGPLSGPNAHMGKDNENGARMAVDELNAKG--FTIGGKKVKFELVGEDDASD 82 Query: 74 ATTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFSD-QITGRGFKN 132 A VA +L+ Q + A++G S T+ S++ G+P ++ S ++ + T +GFK Sbjct: 83 PKQATAVATKLVDQ-KVAAVIGHLNSGTTIPASKIYSDAGIPQVSPSATNPKYTQQGFKT 141 Query: 133 VFQVVSKGSLIGKCQFDYAVALASGNQKVN--KIAIVYEDTAYGTSQATGLRDAAKAAKT 190 F+VV+ + +G YAV QK+ +IA++ + TAYG A AKAA Sbjct: 142 AFRVVANDAQLGAALGKYAV------QKLGTKQIAVIDDRTAYGQGVADEFAKGAKAAGG 195 Query: 191 EIVMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQ 238 IV + +D ++ L+ +VF ++R M+Q Sbjct: 196 TIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQMKQ 243 >gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 10/249 (4%) Query: 6 AALPTLSLAQQ-KTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIK 64 A +P ++AQ+ + + +G PL+G A G +++ G+ + + +NA ++GG KIK Sbjct: 16 ALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERLNAQ--PITVGGKKIK 73 Query: 65 L--IVADSTSAATTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFS 122 I D + + VAQ+L Q AI+G + S +T+ S V G+ + T++ + Sbjct: 74 FDVIAEDDQADPKSGVAVAQKLADQG-VKAIVGPYNSGVTIPASRVYNDAGIVVATVASN 132 Query: 123 DQITGRGFKNVFQVVSKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLR 182 +IT +GF +F+V + S +G YA K ++A++ + TAYG A Sbjct: 133 PKITQQGFATLFRVAASDSQLGGKMALYAAK----ELKFKRVAVIDDRTAYGQGLAQEFI 188 Query: 183 DAAKAAKTEIVMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKID 242 AKA ++V + +D T ++ ++ VF Y I R M+Q +D Sbjct: 189 KVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGVD 248 Query: 243 MPIRRANRI 251 +P+ + I Sbjct: 249 VPLMGGDGI 257 >gi|300311113|ref|YP_003775205.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 383 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 6/245 (2%) Query: 4 LAAALPTLSLAQQ--KTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGA 61 +AAAL +L+L Q I +GV P +G +A G++ R G++L EINAAGG L G Sbjct: 9 VAAALMSLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGG---LLGR 65 Query: 62 KIKLIVADSTSAATTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSF 121 +I+LI D + +AQ LI + + VA +G + + LA + +P++ Sbjct: 66 QIQLIERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVA 125 Query: 122 SDQITGRGF-KNVFQVVSKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATG 180 + + + F K V + S K Q A QK K+AI+ + T YG Sbjct: 126 TGTVITKQFEKEKDNYVFRTSAADKIQAKMIADEAVDKQKFTKVAILADSTNYGQLGRED 185 Query: 181 LRDAAKAAKTEIVMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQK 240 L K V E Y + D+T + K + GAQ V + I M + Sbjct: 186 LEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLN 245 Query: 241 IDMPI 245 +PI Sbjct: 246 WHVPI 250 >gi|300311772|ref|YP_003775864.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 65.5 bits (158), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 13/210 (6%) Query: 16 QKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAAT 75 Q TI +G I A F R+G E+ DEINA+GG+ G K+++I D Sbjct: 29 QDTIRIGEINSYK-AQPAFLEPYRRGWEMALDEINASGGVL---GKKLEVIARDDNGNPG 84 Query: 76 TAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMS-FSDQITGR-GFKNV 133 + VA+ L+ + + G F S+ LA+++ ++ V L +D+I + G K Sbjct: 85 DSVRVAEELMARERVALLFGGFLSNTGLALTDYAKQHRVFFLAAEPLTDKIVWQNGNKYT 144 Query: 134 FQVVSKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAK--TE 191 +++ S++ AV L K + AIVY + YG S + K A+ E Sbjct: 145 YRLRPSTSMLVASVVKEAVKL-----KKKRWAIVYPNYEYGQSAVASFKTLMKQAQPDVE 199 Query: 192 IVMDEAYPLGISDVTPLINKLRNSGAQIVF 221 V ++A PLG D + L ++ +F Sbjct: 200 FVAEQAPPLGKIDAGAVTQALADAKPDAIF 229 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 614,638 Number of extensions: 21595 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 113 Number of HSP's successfully gapped: 11 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)