BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0112.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 217 7e-58 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 217 7e-58 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 202 2e-53 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 200 9e-53 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 194 5e-51 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 217 bits (553), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 161/250 (64%), Gaps = 17/250 (6%) Query: 14 FLEVSHVTRRFGGLTAVNDVSFSVNRGDIIGLIGPNGAGKTTLFNLLVGLTKPNQGQVVL 73 L++ V++RFGGL A+N V ++ RG I GLIGPNGAGKTT FN++ GL +P+ G L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 74 DGVSIGGSKPSRIATAGMTKTFQNVALFAEMTVLDNVLV-----------GGLLRHSV-- 120 DG S P +A AG+ +TFQN+ LF EMTVL+NV+V G + RH Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 Query: 121 EDARALAEKN---LARVGLAAIAGKKAGDLSFPERARVEMARALCTGPKLLLLDEVMAAL 177 E+ A+ EK+ L VG+ A + A LS+ ++ R+E+ARAL T P+LL LDE A + Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 178 NETEMDALLELIRSLRDNEGLTFIVVEHHMRAIMNLCNRIIVLCFGQKIAEGTPADIASD 237 N TE L EL+ ++ EG T +++EH ++ +M LCNRI VL +G+ IAEG PAD+ + Sbjct: 185 NATEKLGLRELLVKIQ-AEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKN 243 Query: 238 PAVIDAYLGS 247 PAVI+AYLG+ Sbjct: 244 PAVIEAYLGA 253 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 217 bits (552), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 161/250 (64%), Gaps = 17/250 (6%) Query: 14 FLEVSHVTRRFGGLTAVNDVSFSVNRGDIIGLIGPNGAGKTTLFNLLVGLTKPNQGQVVL 73 L++ V++RFGGL A+N V ++ RG I GLIGPNGAGKTT FN++ GL +P+ G L Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 74 DGVSIGGSKPSRIATAGMTKTFQNVALFAEMTVLDNVLV-----------GGLLRHSV-- 120 DG S P +A AG+ +TFQN+ LF EMTVL+NV+V G + RH Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 121 EDARALAEKN---LARVGLAAIAGKKAGDLSFPERARVEMARALCTGPKLLLLDEVMAAL 177 E+ A+ EK+ L VG+ A + A LS+ ++ R+E+ARAL T P+LL LDE A + Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 178 NETEMDALLELIRSLRDNEGLTFIVVEHHMRAIMNLCNRIIVLCFGQKIAEGTPADIASD 237 N TE L EL+ ++ EG T +++EH ++ +M LCNRI VL +G+ IAEG PAD+ + Sbjct: 185 NATEKLGLRELLVKIQ-AEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKN 243 Query: 238 PAVIDAYLGS 247 PAVI+AYLG+ Sbjct: 244 PAVIEAYLGA 253 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 202 bits (514), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 154/246 (62%), Gaps = 15/246 (6%) Query: 15 LEVSHVTRRFGGLTAVNDVSFSVNRGDIIGLIGPNGAGKTTLFNLLVGLTKPNQGQVVLD 74 L+V VTR+FGGL A N++S V G+++ LIGPNGAGK+TLFN + G+ P G V Sbjct: 356 LDVRSVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSVQFR 415 Query: 75 GVSIGGSKPSRIATAGMTKTFQNVALFAEMTVLDNVLVGGLLRHS------------VED 122 G + G IA GM+++FQ+V L MTVL+NV +G LR E+ Sbjct: 416 GQEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLDRKEE 475 Query: 123 ARALAE--KNLARVGLAAIAGKKAGDLSFPERARVEMARALCTGPKLLLLDEVMAALNET 180 AR LAE + + RVGL A + AG LS ++ +E+ARAL P LLLLDE A L Sbjct: 476 ARILAEAARQIERVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAAGLRLG 535 Query: 181 EMDALLELIRSLRDNEGLTFIVVEHHMRAIMNLCNRIIVLCFGQKIAEGTPADIASDPAV 240 E AL EL+R LR EG+ ++VEH M +M L +RI+V+ FGQKIAEG PADI ++PAV Sbjct: 536 EKQALAELLRKLR-GEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADIQNNPAV 594 Query: 241 IDAYLG 246 ++AYLG Sbjct: 595 LEAYLG 600 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 200 bits (509), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 108/249 (43%), Positives = 153/249 (61%), Gaps = 16/249 (6%) Query: 14 FLEVSHVTRRFGGLTAVNDVSFSVNRGDIIGLIGPNGAGKTTLFNLLVGLTKPNQGQVVL 73 LEVS+++ RFGGL AV+ VS +V ++ +IGPNGAGKTT+FN + G +P G+++L Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 74 DGVSIGGSKPSRIATAGMTKTFQNVALFAEMTVLDNVLVG-----------GLL-----R 117 DG SI ++A G+ +TFQN+ LF MTV++N+LV GLL R Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 118 HSVEDARALAEKNLARVGLAAIAGKKAGDLSFPERARVEMARALCTGPKLLLLDEVMAAL 177 S ++A A L ++GL A+A ++AG LS+ + RVE+AR + T P+LLLLDE A L Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 Query: 178 NETEMDALLELIRSLRDNEGLTFIVVEHHMRAIMNLCNRIIVLCFGQKIAEGTPADIASD 237 N E L +LI LR G+ +++EH M IM + +RI+V+ G+ I GTP + SD Sbjct: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 Query: 238 PAVIDAYLG 246 VI AYLG Sbjct: 248 ERVIKAYLG 256 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 194 bits (493), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 154/251 (61%), Gaps = 17/251 (6%) Query: 14 FLEVSHVTRRFGGLTAVNDVSFSVNRGDIIGLIGPNGAGKTTLFNLLVGLTKPNQGQVVL 73 L+++ +++ FGGL + V+F+V +G+I GLIGPNGAGKTT+FNL+ GL + + G + Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 74 DGVSIGGSKPSRIATAGMTKTFQNVALFAEMTVLDNVLVG----------------GLLR 117 + IG P +I G+ +TFQN+ +F EMT+L+NV+VG G R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 118 HSVEDARALAEKNLARVGLAAIAGKKAGDLSFPERARVEMARALCTGPKLLLLDEVMAAL 177 ++ ++AR A + L+ V L A A LS+ E+ ++E ARAL T PKLLLLDE +A + Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 178 NETEMDALLELIRSLRDNEGLTFIVVEHHMRAIMNLCNRIIVLCFGQKIAEGTPADIASD 237 N E L+ I +++ G T ++EH MR +M LC RI VL FG+ IAEGTP I ++ Sbjct: 182 NPAEKTELMSEIVNIKQ-RGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 Query: 238 PAVIDAYLGSS 248 VI+AYLG Sbjct: 241 QEVIEAYLGKE 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 770,800 Number of extensions: 32804 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 129 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 143 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)