BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0111.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 218 4e-58 gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 216 1e-57 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 214 3e-57 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 210 1e-55 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 209 2e-55 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 218 bits (554), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 111/234 (47%), Positives = 161/234 (68%), Gaps = 1/234 (0%) Query: 3 LLSIKGLHASYGASPVLRDVSLEVAQGSFTAVIGANTAGKSTMLRAISGLLSKVSGQILF 62 +L ++ L +YG ++ +SL + +G TA++GAN AGKST L AISGL+ G++L Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 63 DGKELLKMPAHQIPAQGIAHVPEGRHIFPGMTVEENLFLGAYSCRSQAAVLKQRFDDIYA 122 G++LL+M H+I G+ V EGR +TVEENL LGAY+ + + V + + +Y+ Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARD-LEWVYS 128 Query: 123 LFPRLHERRQQLAGTLSGGEQQMVALGRALMLKPRLLMLDEPSHGLAPKVVEELHHALVK 182 LFP L R LAG LSGGEQQM+A+GRALM KP++L+LDEPS GLAP +++E+ + + Sbjct: 129 LFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQE 188 Query: 183 IHKSGLTILLVEQNTRLALSVAERASVLQAGQIVLSGDAGSLMDDARVREAYLG 236 I+K+G+T+LLVEQN R AL +A+R VL+ G+IVL +L+ + +V EAYLG Sbjct: 189 INKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 216 bits (550), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/240 (48%), Positives = 160/240 (66%), Gaps = 6/240 (2%) Query: 3 LLSIKGLHASYGASPVLRDVSLEVAQGSFTAVIGANTAGKSTMLRAISGLL---SKVSGQ 59 LL + GL A YG L D +L + G VIG N AGKST+L A+ G L + SG+ Sbjct: 25 LLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 84 Query: 60 ILFDGKELLKMPAHQIPAQGIAHVPEGRHIFPGMTVEENLFLGAYSC--RSQAAVLKQRF 117 I F G+++ +M + A+G++ VPE R +F MTVE+NL LGAY ++ L Q+ Sbjct: 85 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQ- 143 Query: 118 DDIYALFPRLHERRQQLAGTLSGGEQQMVALGRALMLKPRLLMLDEPSHGLAPKVVEELH 177 D +Y LFPRL ERR+Q AGTLSGGE+QM+A+GRALM KP++LMLDEPS GLAP + E+ Sbjct: 144 DFVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREIL 203 Query: 178 HALVKIHKSGLTILLVEQNTRLALSVAERASVLQAGQIVLSGDAGSLMDDARVREAYLGI 237 + ++ +G+ LLVEQN R AL VA+ VL+ G+IV +G AG L +D+R+ E+YLG+ Sbjct: 204 SIISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEIVCAGPAGVLAEDSRIVESYLGV 263 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 214 bits (546), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 159/234 (67%), Gaps = 2/234 (0%) Query: 3 LLSIKGLHASYGASPVLRDVSLEVAQGSFTAVIGANTAGKSTMLRAISGLLSKVSGQILF 62 +L +H YGA L VSL V +G +IGAN AGK+T+L + G SG+++F Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 63 DGKELLKMPAHQIPAQGIAHVPEGRHIFPGMTVEENLFLGAYSCRSQAAVLKQRFDDIYA 122 +G+++ ++ H+I +G+A PEGR +FP +TV ENL +GA+ ++A ++Q + ++ Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEA--IEQGIEYVFG 119 Query: 123 LFPRLHERRQQLAGTLSGGEQQMVALGRALMLKPRLLMLDEPSHGLAPKVVEELHHALVK 182 LFPRL ER Q AGT+SGGEQQM+A+GRALM KPRLL+LDEP+ GLAP V+ ++ + Sbjct: 120 LFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRT 179 Query: 183 IHKSGLTILLVEQNTRLALSVAERASVLQAGQIVLSGDAGSLMDDARVREAYLG 236 I +SG+T+ LVEQN AL VA+R VL+ G +V+S +L+ ++ VR+AYLG Sbjct: 180 IRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 210 bits (534), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 158/237 (66%), Gaps = 3/237 (1%) Query: 3 LLSIKGLHASYGASPVLRDVSLEVAQGSFTAVIGANTAGKSTMLRAISGLLSKVSGQILF 62 +L+I LHA+YG VL +S+EV +G +IG+N AGK+T +RAISG++ G++ Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 63 DGKELLKMPAHQIPAQGIAHVPEGRHIFPGMTVEENLFLGAYSCRSQA---AVLKQRFDD 119 GK + + +H+I G+AH PEGR +F M+V +NL LGA+ ++A + + Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 120 IYALFPRLHERRQQLAGTLSGGEQQMVALGRALMLKPRLLMLDEPSHGLAPKVVEELHHA 179 LFPRL ER+ QLAGTLSGGEQQM+A+ RA+ML P +++LDEPS GLAP +V+E+ Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 180 LVKIHKSGLTILLVEQNTRLALSVAERASVLQAGQIVLSGDAGSLMDDARVREAYLG 236 +V++ + G+T+LLVEQ AL+VA+ VL+ G+I + G A L +D V+ AYLG Sbjct: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 209 bits (532), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 156/237 (65%), Gaps = 3/237 (1%) Query: 2 SLLSIKGLHASYGASPVLRDVSLEVAQGSFTAVIGANTAGKSTMLRAISGLL--SKVSGQ 59 ++L ++ L +YG ++ + LEV +G +IGAN AGK+T L+AI+G L S+V G Sbjct: 4 NILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGH 63 Query: 60 ILFDGKELLKMPAHQIPAQGIAHVPEGRHIFPGMTVEENLFLGAYSCRSQAAVLKQRFDD 119 I + G+ L + ++ +A VPEGR +F M+++ENL +GAY+ + + D Sbjct: 64 IEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAAD-IDK 122 Query: 120 IYALFPRLHERRQQLAGTLSGGEQQMVALGRALMLKPRLLMLDEPSHGLAPKVVEELHHA 179 +A+FPRL ER Q+AGTLSGGEQQM+A+ RALM P+LL+LDEPS GL+P +VE++ Sbjct: 123 WFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEV 182 Query: 180 LVKIHKSGLTILLVEQNTRLALSVAERASVLQAGQIVLSGDAGSLMDDARVREAYLG 236 + + G+TILLVEQN +LAL A R V+++G I + G A ++DD RV+ AYLG Sbjct: 183 IRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,118 Number of extensions: 30197 Number of successful extensions: 482 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 302 Number of HSP's successfully gapped: 141 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)