BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0110.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312281|ref|YP_003776373.1| citrate lyase beta subunit [Her...    69   5e-13
gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit [Her...    62   7e-11

>gi|300312281|ref|YP_003776373.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 15/253 (5%)

Query: 16  NKAMTVRINTLQSPYMFRDVIDLLSHCPR-LDYLLIPKVNQAQDLYAVETLINQVELATD 74
           ++ +  R++ +  P+  +DV  L     R L Y+++PK     D+      I +   A  
Sbjct: 77  HRRIGARLHDVSHPHFEQDVAILCGAAARELAYVMLPKPEGIDDVLRALESIQRAARAAG 136

Query: 75  RPRRIGLEAMIETAEGLCNVEEIARAGSRLQALHFGSGDFAASIASRTTGIGMAHPGYRI 134
           R   + ++ ++ET   L +  +IA A  ++Q+L FG  DF ++      G  M  PG   
Sbjct: 137 R-SDLPVQVLVETHGALADAWKIA-ALPQVQSLSFGVMDFVSAHYGAIPGSAMRSPG--- 191

Query: 135 TQHGRSHLNDMWHYAQMRIVVACRAYGLRPIDGPYGDYSDAGGSTEAAERAAI-LGYEGK 193
                   + +   A++ I  AC A+G  P      D  +     + A RAA   GY   
Sbjct: 192 -----QFDHPLVRRAKLDISAACHAHGKVPSHNVTTDIKNPAAVADDACRAAQEFGYTRM 246

Query: 194 QAIHPSQIEAINAVFSPTAAEILQATRIIAAMQQAQAQHRGAVALDGKLLDLVSIRLADN 253
            +IHP QI  I    SP   E   A +I+    +AQA   G +   G L D  S R   +
Sbjct: 247 WSIHPDQIRPIVQAMSPATEEADLAAQILL---KAQAVQWGPIQHLGNLHDRASYRYYWS 303

Query: 254 ILGKARKIGLPIP 266
           IL +A   G+ +P
Sbjct: 304 ILQRAHATGVTLP 316


>gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 25/184 (13%)

Query: 80  GLEAMIETAEGLCNVEEIARAGSRLQALHFGSGDFAASIASRTTGIGMAHPGYRITQHGR 139
           GL A+IE+A GL  + +IA A   +Q L FGS D           +GM        Q G 
Sbjct: 114 GLIALIESAAGLAAMRQIA-AAPGVQRLAFGSID-------AQLDLGM--------QCGP 157

Query: 140 SHLNDMWHYAQMRIVVACRAYGLR-PIDGPYGDYSDAGGSTEAAERAAILGYEGKQAIHP 198
                +    +M  V+A R  G+  P+DG    + D        ERA  LG+  K  IHP
Sbjct: 158 EEEELLSLRVEM--VLASRLAGIAAPVDGVTAGFDDEALLVRGVERARRLGFGAKLCIHP 215

Query: 199 SQIEAINAVFSPTAAEILQATRIIAAMQQAQAQHRGAVALDGKLLDLVSIRLADNILGKA 258
            Q+E +   F P+  E+  A  ++AA+   +A   GA++L G+++D   I  A+  L   
Sbjct: 216 RQVEVVRRGFLPSEQELAWAAEVMAAV---RASDGGAISLKGRMIDRPLILQAEKFL--- 269

Query: 259 RKIG 262
           R++G
Sbjct: 270 RQVG 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 819,557
Number of extensions: 32954
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)