BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0109.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312111|ref|YP_003776203.1| LysR family transcription regul... 228 4e-61 gi|300312305|ref|YP_003776397.1| LysR family transcription regul... 207 1e-54 gi|300312482|ref|YP_003776574.1| LysR family transcription regul... 97 1e-21 gi|300313131|ref|YP_003777223.1| LysR family transcription regul... 95 6e-21 gi|300313657|ref|YP_003777749.1| LysR family transcription regul... 88 8e-19 >gi|300312111|ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 228 bits (582), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 176/288 (61%) Query: 1 MRYNLTSLKMFIAVVETGSLAKAAERENIAPSALSRRISDLEELVGTSLLDRHNNGARVT 60 M ++LT L++FI + E SL ++AER N++ A S RI +LE GT LL R + G ++T Sbjct: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 Query: 61 PAGETLERYARSVFLTFERMRVELSEHGKGERGHVRLFSNSSGIMDSLSTYLQVFLSAHP 120 PAG TL +A+ E ++ ++ ++ G +G++R+F+N++ + + + L FL+ HP Sbjct: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 Query: 121 AVAIHLEEWSSPYIVRAVREGTADLGIINAAVPHEGLMTFPYNSYRLVLVAPASHPLARR 180 V + LEE + I+R ++EGTAD+GI+ V EGL +++ RLVL HPLA Sbjct: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 Query: 181 EQVDFSETLAYDQVGFHNGSAIFSLASRAAQANGQQLKIRMQVTSFDAVREMVRANIGIA 240 + F +TL Y+ +G H GS + S+ NGQ+LK+R+QV SF+A+ M+ N+GI Sbjct: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 Query: 241 ILPEFAAAPYAQSMGYAWVPLSDSWAAIELKICVRDIDTIPSAARKLV 288 ILP AA + Q+M + V LSD W+ E + V+DIDT+ AR LV Sbjct: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLV 288 >gi|300312305|ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 207 bits (526), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/290 (37%), Positives = 171/290 (58%) Query: 2 RYNLTSLKMFIAVVETGSLAKAAERENIAPSALSRRISDLEELVGTSLLDRHNNGARVTP 61 R+ L+ L++F+ +VE+GS+ A+R ++A ++ S RI ++E+ +GT LL+R G + T Sbjct: 4 RFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTTD 63 Query: 62 AGETLERYARSVFLTFERMRVELSEHGKGERGHVRLFSNSSGIMDSLSTYLQVFLSAHPA 121 AG L +AR + E++R EL ++ +G +GH+RL N+S + + L L FL+ HP Sbjct: 64 AGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHPH 123 Query: 122 VAIHLEEWSSPYIVRAVREGTADLGIINAAVPHEGLMTFPYNSYRLVLVAPASHPLARRE 181 I LEE S +V+AV +G AD+GII + L T+P+ LV V HPLARR+ Sbjct: 124 TDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGPLQTYPFRQDHLVAVLSKRHPLARRK 183 Query: 182 QVDFSETLAYDQVGFHNGSAIFSLASRAAQANGQQLKIRMQVTSFDAVREMVRANIGIAI 241 + F+E L D VG SA+ S A G++L+ R+++ SFD + MV +G+A+ Sbjct: 184 SLAFAELLGEDFVGLSGDSALQQHLSGHATRAGKRLQYRVRLRSFDGICRMVEHQVGVAV 243 Query: 242 LPEFAAAPYAQSMGYAWVPLSDSWAAIELKICVRDIDTIPSAARKLVSHL 291 LPE AA M +PLSD W+ +L ICVR ++ +P R+L+ L Sbjct: 244 LPETAALASTPHMDIRAIPLSDGWSRRQLLICVRGLEGLPGPTRELIQAL 293 >gi|300312482|ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 95/186 (51%) Query: 6 TSLKMFIAVVETGSLAKAAERENIAPSALSRRISDLEELVGTSLLDRHNNGARVTPAGET 65 T+L+ F+ VV GS+++A++R N+A SA+SR+IS LE+++ T L +R G ++ GE Sbjct: 9 TALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGMVLSAGGEM 68 Query: 66 LERYARSVFLTFERMRVELSEHGKGERGHVRLFSNSSGIMDSLSTYLQVFLSAHPAVAIH 125 L +AR + L +R+ +L G VRL ++ +D L + F +P Sbjct: 69 LAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQKKYPGFVFQ 128 Query: 126 LEEWSSPYIVRAVREGTADLGIINAAVPHEGLMTFPYNSYRLVLVAPASHPLARREQVDF 185 L + + R VREG AD+G+ A +P + + L+ HPLAR Q+ Sbjct: 129 LFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPLARFRQISV 188 Query: 186 SETLAY 191 + Y Sbjct: 189 GQLKPY 194 >gi|300313131|ref|YP_003777223.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 6/265 (2%) Query: 4 NLTSLKMFIAVVETGSLAKAAERENIAPSALSRRISDLEELVGTSLLDRHNNGARVTPAG 63 ++ L+ F+ +VE +AAER +A SALSR+I +LE + LL R +T AG Sbjct: 3 SIRQLRYFVEIVEARGYTRAAERLFVAQSALSRQIKELEADLDVVLLRREAKTFELTQAG 62 Query: 64 ETLERYARSVFLTFERMRVELSEHGKGERGHVRLFSNSS-GIMDSLSTYLQVFLSAHPAV 122 + +R + L +R + GKGE G +RL +SS + L L L A P + Sbjct: 63 QDFYERSRKILLDLDRAVAQARTIGKGEHGALRLLHSSSVPLTAPLGPMLNEALKAFPGI 122 Query: 123 AIHLEEWSSPYIVRAVREGTADLGIINAAV--PHEGLMTFPYNSYRLVLVAPASHPLARR 180 ++ + + S Y R + EG+AD+G+ + + L + RLV PA H LA+R Sbjct: 123 SLEISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLAQR 182 Query: 181 EQVDFSETLA--YDQVGFHNGSAIFSLASRAAQANGQQLKIRMQVTSFDAVREMVRANIG 238 ++V+ +E + V + + L + A+G ++ + +++ +V A G Sbjct: 183 QEVEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAGFG 242 Query: 239 IAILPEFAAAPYAQSMGYAWVPLSD 263 IA++P+ + A + + G ++ L D Sbjct: 243 IAVVPQ-SMASTSLAAGVSFPALKD 266 >gi|300313657|ref|YP_003777749.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 88.2 bits (217), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 3/288 (1%) Query: 6 TSLKMFIAVVETGSLAKAAERENIAPSALSRRISDLEELVGTSLLDRHNNGARVTPAGET 65 T+++ F+ VV GS+ +AA N+A SA+SR+I+ LE + T L +R G R AGE Sbjct: 39 TAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGEL 98 Query: 66 LERYARSVFLTFERMRVELSEHGKGERGHVRLFSNSSGIMDSLSTYLQVFLSAHPAVAIH 125 L +A + L ER+ EL+ RG V+L ++ + ++ F H + Sbjct: 99 LAAHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQ 158 Query: 126 LEEWSSPYIVRAVREGTADLGIINAAVPHEGL-MTFPYNSYRLVLVAPASHPLARREQVD 184 L ++ ++ + +REG DLG+ P + + F + L ++ PA H LA R+QV Sbjct: 159 LSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPA-HELAHRKQVS 217 Query: 185 FSETLAYDQVGFHNGSAIFSLASRAAQANGQQLKIRMQVTSFDAVREMVRANIGIAILPE 244 SE Y + L L+ + S A+ V A GI Sbjct: 218 LSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAA 277 Query: 245 FAAAPYAQSMGYAWVPLSDS-WAAIELKICVRDIDTIPSAARKLVSHL 291 + A +P+ D ++L+I T+P AAR ++ L Sbjct: 278 LPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNAL 325 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 911,099 Number of extensions: 36848 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 60 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)