BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0108.p (417 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 442 e-125 gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 166 2e-42 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 77 2e-15 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 442 bits (1138), Expect = e-125, Method: Compositional matrix adjust. Identities = 219/392 (55%), Positives = 284/392 (72%), Gaps = 5/392 (1%) Query: 27 KPLEGIKVVSLEQAIAAPFASRQLGELGARVIKVERPGVGDFARAYDDKVRGMSSQFMWT 86 +PLEGI V+SLE AIAAPF +RQL +LGARVIK+ERPGVGDFAR YD +V G+SS F+WT Sbjct: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWT 65 Query: 87 NRSKESITLDLKEAEGLEVLKRLLADADVFIQNLAPGAIARLGLSDEVLRAEFPQLIICH 146 NRSKES+TL+LK+ EG ++ +LL ADV +QNLAPGA A LGLS + L A P+LI+C Sbjct: 66 NRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVCD 125 Query: 147 ISGYGRSGPYANKKAYDLLVQCELGVPGINGTPGGQAKIGIAVADIATGMYAYSGILTSL 206 ISGYG GPY +KKAYDLL+Q E G + GTP K G ++ADIA GMYAYS IL +L Sbjct: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSNILAAL 185 Query: 207 IQRGRTGKGVI---FEVSLFDALAEWMSYPIYYQKYGGVDLP-RTGTRHSAISPYGPFKA 262 I+RGR G+ ++S+ ++LAEWMS+P+YY Y G P R+G H+ I PYGPF A Sbjct: 186 IKRGREGREGRGSHIDLSMLESLAEWMSFPLYY-AYQGASAPLRSGAEHATIYPYGPFSA 244 Query: 263 SDGKEVFLGIQNEREWKNFCDQVLLAPQVATDPRFINNSLRVVNRDALEALVAQHFQRFD 322 DGK V LG+QNEREWK FC+QVL +A+D RF +N+ R +RD L L+ F Sbjct: 245 GDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVFAGLS 304 Query: 323 SEQAIARLESAGIANARLNSIMELLSHPQFTQRGRWRQVDSPVGPVEMLLPPVTSDDFEP 382 +EQ ARL+ A IANAR+N++ EL HPQ R RW +V +PVG V LLPP +D ++ Sbjct: 305 AEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEVATPVGKVAALLPPGANDSYDY 364 Query: 383 QLGAVPAVGQHTDSVLAALGFDSAAIAALRDK 414 ++ A+PA+GQHT+S+L+ALG+++ IAALR++ Sbjct: 365 RMEAIPALGQHTESILSALGYEAGQIAALRER 396 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 122/411 (29%), Positives = 199/411 (48%), Gaps = 26/411 (6%) Query: 28 PLEGIKVVSLEQAIAAPFASRQLGELGARVIKVERPGVGDFARAYDDKVRGMSSQFMWTN 87 PL GIKV+ L IA PF SR L E GA VIKVE PG GD R + G S + Sbjct: 10 PLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQA 69 Query: 88 RSKESITLDLKEAEGLEVLKRLLADADVFIQNLAPGAIARLGLSDEVLRAEFPQLIICHI 147 R+K+SITL++K+ E+ ++L +ADV I+N PG + + L E L+ P I+ + Sbjct: 70 RNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRL 129 Query: 148 SGYGRSGPYANKKAYDLLVQCELGVPGINGTPG-GQAKIGIAVADIATGMYAYSGILTSL 206 SGYG++GP + + + + G+ ++G P +IGI++ D ++ G + +L Sbjct: 130 SGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMAL 189 Query: 207 IQRGRT--------------GKGVIFEVSLFDALAEWMSYPIYYQKYGGVDLPRTGTRHS 252 R T G+G + +V+L++A+ M + + GV RTG Sbjct: 190 RHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALP 249 Query: 253 AISPYGPFKASDGKEVFLGIQNEREWKNFCDQVLLAPQVATDPRFINNSLRVVNRDALEA 312 I P + +G + + + +K + +A DP N RV + ++A Sbjct: 250 GIVPSNTYTTGEGMNIVIAGNGDAIFKRLM-SAIGREDMANDPGLARNDGRVPRTEEIDA 308 Query: 313 LVAQHFQRFDSEQAIARLESAGIANARLNSIMELLSHPQFTQRGRWRQVDSPVG-PVEML 371 + Q E A+A L++A + ++ S+ ++++ QF R + Q G PV+ Sbjct: 309 AIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVK-- 366 Query: 372 LPPVTSDDFEP-----QLGAVPAVGQHTDSVLAALGFDSAAIAALRDKHII 417 LP +T E LG P +G H+D +L +LG+D A I LRD+ ++ Sbjct: 367 LPGITPKMSETPGQTKWLG--PELGAHSDEILQSLGYDEAHIKMLRDQGVV 415 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 15/199 (7%) Query: 27 KPLEGIKVVSLEQAIAAPFASRQLGELGARVIKVERPGVGDFARAYDDKVRGMSSQFMWT 86 +PL GI+V+ L + +A P A+R L LGA V++++ P + + V G Sbjct: 206 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRID-PYGWEEPNTVPEVVLG-------- 256 Query: 87 NRSKESITLDLKEAEGLEVLKRLLADADVFIQNLAPGAIARLGLSDEVLRAEFPQLIICH 146 K L+LK+ L+ L+RL+ AD+ + A+A+LGL R P LI Sbjct: 257 ---KRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 313 Query: 147 ISGYGRSGPYANKKAYDLLVQCELGVPGINGTPGGQA---KIGIAVADIATGMYAYSGIL 203 + YG SG + ++ +D L+Q G+ G A + + D ATG + L Sbjct: 314 LDAYGWSGAWQCRRGFDSLIQMSTGIAEAGMRVMGSAAPVNLPVQAIDHATGYLMAAAAL 373 Query: 204 TSLIQRGRTGKGVIFEVSL 222 L R G G+ SL Sbjct: 374 RGLTLRMTRGVGIEVRASL 392 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,384,228 Number of extensions: 60614 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 3 Length of query: 417 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 329 Effective length of database: 1,203,190 Effective search space: 395849510 Effective search space used: 395849510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)