BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0106.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   168   9e-43
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    86   4e-18

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  168 bits (425), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 188/349 (53%), Gaps = 12/349 (3%)

Query: 36  LNRVLLVTDPGFVKTGQVDGVISSLQAAGMTALVYAEVQADPPEAVVLAAAANTRKNNIE 95
           + + L+VTD G    G +D V+  L+  G+ A+VY +   +P E  V AA A  R++  +
Sbjct: 29  IKKPLVVTDMGIRNAGLLDKVLGQLKE-GVGAVVYDQTPPNPNEGAVRAAVALFRQHGCD 87

Query: 96  LVIGLGGGSSMDVAKLIAVLATSDQPLGDMY----GIGNVKGTRLPLIQIPTTAGTGSEM 151
            ++ +GGGSS+D+AK +AV  T + PL        G+ N+     P+I IPTTAGTGSE+
Sbjct: 88  GIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANITAKTAPVIAIPTTAGTGSEV 147

Query: 152 THISIVTTGATTKMGVVSPQLFADIAILDAELTVGLPPKITAATGIDAMVHAIEAYTNIN 211
              +I+      K+G++SP L   +AI D ELT+GLPP +TAATG+DA+ H +E +    
Sbjct: 148 GRGAILILDDGRKVGIISPYLVPKLAICDPELTLGLPPLMTAATGMDAIAHCLETFM-AP 206

Query: 212 TKNVISDVLARQSLALLFDNLQTSCADGKNLAARQNMLVGAMLAGMAVANASCGAVHALA 271
           + N  +D +A   L   + +++ +  +  +  AR NM+  +M   MA      G VH+L+
Sbjct: 207 SFNPPADGIALDGLWRAWAHIERATREPGDREARLNMMSASMQGAMAF-QKGLGCVHSLS 265

Query: 272 YPIGGIF-HVAHGVSNSLVLPHVLRFNAPNAHVQYAELAAIIAPQANGSSEARTDAFIKA 330
           + +GGI   + HG  N++ LP ++ FN   A +      A +A      S A     I+ 
Sbjct: 266 HSLGGINPRLHHGTLNAIFLPAIIAFNESAASMVKDNKMARMAHAMGLGSGAEIGPAIR- 324

Query: 331 LVDMTAKVGIETQLRQVGIAASDLDRMAQDSMLQTRLLKNNPRVVSQDD 379
             +M+ ++G+   L ++G+  S   ++ Q + L     K NPR  S+ D
Sbjct: 325 --EMSRRLGLPAGLGELGVTESMFPQIIQGA-LADHSHKTNPREASEQD 370


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 90  RKNNIELVIGLGGGSSMDVAKLIAVLATSDQPLGDMYGIGNVKGTRLPLIQIPTTAGTGS 149
           R    +  I +GGGS+M + K IA+                   + LP++ IPTT   GS
Sbjct: 82  RALGADCAIAIGGGSTMGLGKAIAL------------------ESELPILAIPTTY-AGS 122

Query: 150 EMTHISIVTTGATTKMGVVSPQLFADIAILDAELTVGLPPKITAATGIDAMVHAIEAYTN 209
           EMT I  +T     K G  + ++     I D  L++GLP  ++  +GI+AM HA E    
Sbjct: 123 EMTPIYGLTEAGRKKTGRDA-RVLPRTVIYDPALSLGLPLDLSVTSGINAMAHAAEGLYA 181

Query: 210 INTKNVISDVLARQSLALLFDNLQTSCADGKNLAARQNMLVGAMLAGMAVANASCGAVHA 269
            +  N I  +LA + L  L + L    A   ++ AR   L GA L G  + N      H 
Sbjct: 182 PDA-NPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWLCGTVLGNVGMSLHHK 240

Query: 270 LAYPIGGIFHVAHGVSNSLVLPHV 293
           L + +GG +++ H  +++++LPH 
Sbjct: 241 LCHTLGGSYNLPHAQTHTVILPHA 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,122,387
Number of extensions: 46572
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)