BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0103.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312954|ref|YP_003777046.1| amino acid ABC transporter perm... 162 2e-41 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 127 1e-30 gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC t... 108 7e-25 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 106 2e-24 gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC t... 104 1e-23 >gi|300312954|ref|YP_003777046.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 162 bits (411), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/307 (35%), Positives = 175/307 (57%), Gaps = 26/307 (8%) Query: 4 ELIYLAILDGVSYAALLFLVALGMTLVFGVMNIINMAHGSFYAFGGYLAATFGGWAIAAG 63 LI+ +L+ + + +LFL+A G+TL+FGVMN +N+AHGSF+ G Y+AA +A Sbjct: 3 NLIFEQVLNSLQFGVMLFLIASGLTLIFGVMNFVNLAHGSFFMIGAYVAAV-----VAGA 57 Query: 64 LSPAWSFLLLPLAAVLVGTVLGGLMEITLLKRIYNKDPILQLLITFSTFMIFEDLQRMIW 123 W LL+ L A LG L+E + +R+Y KD ++Q+L TF+ +IF D RMIW Sbjct: 58 SGSFWLGLLVALPAT---AALGFLLEWVVFRRLYQKDHMVQVLATFAFILIFNDGVRMIW 114 Query: 124 GTQPYFVSELVKYTGVVDVMDITYTRYQLFILPSVALVAFLALRYFLRSSRTGRQIVAVA 183 G QP ++ + G V++ + Y+ Y+L ++ +V +V +AL + + +R G + A A Sbjct: 115 GPQPLPLNMPAAFAGPVNLFGLPYSSYRLLVM-AVGVVVAIALYFLINRTRIGMWVRAGA 173 Query: 184 HNREVSTALGINVRKICLLTFIVASMLGALGGALASQTTSWVPGIGADMIVLSFAVVATA 243 +N E+ TA+GIN+R + L F +L AL G + + G+G D+++L+F VV Sbjct: 174 NNLEMVTAMGINIRLLFRLVFSFGLLLAALAGIMLGPLVAVQAGMGDDVLILAFVVVVIG 233 Query: 244 GLGQIEGALVAALMIG----LARSFAVYLF-------------PEIEVLVPYLIMVLVLL 286 G+G + GA + AL++G L RS LF P + ++ YL+M+ VL Sbjct: 234 GIGSVPGAAIGALIVGVVDTLGRSLLPQLFALFLSADAAASVGPALGSMMIYLVMIAVLF 293 Query: 287 FRPQGLF 293 +RP GLF Sbjct: 294 WRPSGLF 300 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 127 bits (318), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 159/289 (55%), Gaps = 16/289 (5%) Query: 11 LDGVSYAALLFLVALGMTLVFGVMNIINMAHGSFYAFGGYLAATFGGWAIAAGLSPAWSF 70 ++G YA L +LG+ ++FG++N+IN AHG+ Y G +LA W + L + + Sbjct: 20 VNGSFYAML----SLGLAVIFGLLNVINFAHGTLYMLGAFLA-----WMGLSYLGLNY-W 69 Query: 71 LLLPLAAVLVGTVLGGLMEITLLKRIYNKDPILQLLITFSTFMIFEDLQRMIWGT--QPY 128 ++L +A +LVG G ++E T+L+ +Y D + LL+TF ++ E + R I+G QPY Sbjct: 70 VMLIVAPILVGA-FGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPY 128 Query: 129 FVSELVKYTGVVDVMDITYTRYQLFILPSVALVAFLALRYFLRSSRTGRQIVAVAHNREV 188 V +L++ G ++ + Y+ +++ + +V F A + + +R G + A N ++ Sbjct: 129 SVPDLLQ--GATNLGFMVLPNYRAWVVVASLIVCF-ATWFVIEKTRLGAYLRAGTENPKL 185 Query: 189 STALGINVRKICLLTFIVASMLGALGGALASQTTSWVPGIGADMIVLSFAVVATAGLGQI 248 A GINV + LT+ L A G LA+ P +G+++I+ FAVV G+G I Sbjct: 186 VEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSI 245 Query: 249 EGALVAALMIGLARSFAVYLFPEIEVLVPYLIMVLVLLFRPQGLFSVAQ 297 G+++ L++GL +PE+ V ++IM +VL+ RP GLF + Sbjct: 246 LGSIITGLVLGLIEGLTRVFYPELSATVVFIIMAIVLMVRPAGLFGKEK 294 >gi|300313286|ref|YP_003777378.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 108 bits (269), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 150/286 (52%), Gaps = 14/286 (4%) Query: 10 ILDGVSYAALLFLVALGMTLVFGVMNIINMAHGSFYAFGGYLAATFGGWAIAAGLSPAWS 69 + DG++Y +LLFL+++G+++ G+MN IN+AHG+F GGY+ T G+ + Sbjct: 9 LFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTL---LNGMGVPFLAT 65 Query: 70 FLLLPLAAVLVGTVLGGLMEITLLKRIYNKDPILQLLITFS-TFMIFEDLQRMIWG--TQ 126 L +AA +VG VL E +L +R+Y + Q+L + TFM WG Q Sbjct: 66 LPLAFIAAAIVGLVL----ERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQ-WGPTQQ 120 Query: 127 PYFVSELVKYTGVVDVMDITYTRYQLFILPSVALVAFLALRYFLRSSRTGRQIVAVAHNR 186 P + + ++ G + ++ + Y++F++ V +V +AL + +R G QI A N+ Sbjct: 121 PVVLPDWLR--GQISLLGLEVGAYRVFLIGVVVIVT-VALGLLIERTRFGAQIRASVDNQ 177 Query: 187 EVSTALGINVRKICLLTFIVASMLGALGGALASQTTSWVPGIGADMIVLSFAVVATAGLG 246 + LGINV ++ LTF + S L LGG L P +V VVA G G Sbjct: 178 VAAAGLGINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAG 237 Query: 247 QIEGALVAALMIGLARSFAVYLFPEIEVLVPYLIMVLVLLFRPQGL 292 I+G L+AAL++G+ Y PEI V Y +MV++L+ P GL Sbjct: 238 TIKGPLLAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGL 283 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 84/300 (28%), Positives = 151/300 (50%), Gaps = 11/300 (3%) Query: 10 ILDGVSYAALLFLVALGMTLVFGVMNIINMAHGSFYAFGGYLA-ATFGGWAIAAGLSPAW 68 +++G+S A+ L+A+G T+V+G++ +IN AHG Y Y+ T + +G Sbjct: 12 LVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGYPLPL 71 Query: 69 SFLLLPLAAVLVGTVLGGLMEITLLKRIYNKDPILQLLITFSTFMIFEDLQRMIWGTQ-- 126 + +VLV + G +E + + ++ L+ + ++ ++ G + Sbjct: 72 LLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQIGQGARDM 131 Query: 127 --PYFVSELVKYTGVVD-VMDITYTRYQLFILPSVALVAFLALRYFLRSSRTGRQIVAVA 183 P +S +++ D + I Y+R ++ V LV +AL F+ SR GR A A Sbjct: 132 SVPVLISGALEFQMGSDFTVTIPYSR---MVIVGVTLVLMVALTLFIARSRMGRACRACA 188 Query: 184 HNREVSTALGINVRKICLLTFIVASMLGALGGALASQTTSWV-PGIGADMIVLSFAVVAT 242 + ++ LGI+ K+ TF++ +ML A+GG L + T + P IG + +F Sbjct: 189 EDMGMANLLGIDTNKVISFTFVLGAMLAAVGGVLIALTIGKLNPYIGFIAGIKAFTAAVL 248 Query: 243 AGLGQIEGALVAALMIGLARSFAV-YLFPEIEVLVPYLIMVLVLLFRPQGLFSVAQARRV 301 G+G I GA++ +++GLA +FA YL E + +V + ++VL+LLFRP GL +V Sbjct: 249 GGIGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLLGKPDVEKV 308 >gi|300313932|ref|YP_003778024.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 144/285 (50%), Gaps = 9/285 (3%) Query: 8 LAILDGVSYAALLFLVALGMTLVFGVMNIINMAHGSFYAFGGYLAATFGGWAIAAGLSPA 67 L I +GV L FL+A+G+++VFG++ +N +HG+F+ G YL GL Sbjct: 6 LQIANGVGIGMLYFLLAVGLSIVFGLLRFVNFSHGAFFLLGAYLCFQ----VTDLGLGFW 61 Query: 68 WSFLLLPLAAVLVGTVLGGLMEITLLKRIYNKDPILQLLITFSTFMIFEDLQRMIWGTQP 127 WS L+ PL L ++ E +L+ +Y +L T ++ ++ WG Sbjct: 62 WSLLIAPLVVGLFAWIV----ERFVLRHVYALPHHFHILFTVGMALVIQEAVISTWGPLG 117 Query: 128 YFVSELVKYTGVVDVMDITYTRYQLFILPSVALVAFLALRYFLRSSRTGRQIVAVAHNRE 187 V+ GVV Y +Y+LF++ A++A L L + L +R G + A + + E Sbjct: 118 NNVAPPDLLQGVVMWGGFVYPKYRLFVIGLTAVMALL-LWWVLEGTRLGSIVRAGSESTE 176 Query: 188 VSTALGINVRKICLLTFIVASMLGALGGALASQTTSWVPGIGADMIVLSFAVVATAGLGQ 247 + + LG+N+ +I L F + + L GALA+ P +G + + ++F VV GLG Sbjct: 177 MVSLLGLNINRIFSLVFALGAATAGLAGALAAPIRGADPFMGVEALGIAFVVVVIGGLGS 236 Query: 248 IEGALVAALMIGLARSFAVYLFPEIEVLVPYLIMVLVLLFRPQGL 292 GAL+ +++G+ +S ++ E L+ Y+ M V+L RP GL Sbjct: 237 FWGALIGGILVGIVQSVMSTVWSEGAHLMIYVAMAAVMLLRPNGL 281 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.144 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 860,316 Number of extensions: 35787 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 294 Number of HSP's successfully gapped: 25 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)