BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0102.p (316 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314069|ref|YP_003778161.1| amino acid ABC transporter perm... 105 5e-24 gi|300312953|ref|YP_003777045.1| amino acid ABC transporter perm... 88 8e-19 gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC t... 88 1e-18 gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t... 82 5e-17 gi|300311879|ref|YP_003775971.1| amino acid ABC transporter perm... 75 7e-15 >gi|300314069|ref|YP_003778161.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 326 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 34 CAGLAALGISILV-RSGQVSFGHAIFACAAGYAVAFAAKRWTHLDSIALLAVGTLFGGLL 92 C L A ++L+ +G +SFGHA F AGY A K W + L+ +GTL G L+ Sbjct: 31 CFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELGLI-IGTLTGALI 89 Query: 93 GAVIGSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIR-IARPTFFGFV-LER 150 G V+G +R +GI+F M+ LAL+ +L+ + + TGG DG++ + R GF+ LE Sbjct: 90 GLVMGLLAIRRQGIYFTMITLALAQMLFFVALQA-PFTGGEDGLQGVPRGKLLGFLNLES 148 Query: 151 DMFESAILVTAVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLEYVGLSTYQVLLIGYV 210 DM +++ V L+ R + S GQ L AIK NE R +G + L+ +V Sbjct: 149 DMTLYYVVLAIAVAGF---ALIVRTIHSPFGQVLKAIKENEPRAISLGYDVARYKLLAFV 205 Query: 211 ISAALCGLSGALFAITQGLVTPEMGYWVRSGEYVFVAILGGIGHPVGAFVGAAI 264 +SA L GL+GA + G T +W SG V + ++GG+G +G VGA I Sbjct: 206 LSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTILGPIVGAVI 259 >gi|300312953|ref|YP_003777045.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 317 Score = 88.2 bits (217), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 155/296 (52%), Gaps = 16/296 (5%) Query: 25 LKTPIIFATCAGLAALGISILVRSGQVSFGHAIFACAAGYAVAFAAKRW-THLDSIALLA 83 L +IFA A A+L IL G VSFGHA+F Y A A+ T I LLA Sbjct: 32 LTRILIFAMVA--ASLNF-ILGYGGMVSFGHAVFFGLGAYVTAIASFHGVTSAWLIWLLA 88 Query: 84 VGTLFGGLLGAVIGSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIRI-ARPT 142 L L+G VIG +R R ++F M+ +AL+ + Y F GG DG+++ ARP Sbjct: 89 --ALVTALVGLVIGVIALRTRAVYFIMITMALAQLFYYFFVGF-RYYGGDDGLQVTARPL 145 Query: 143 F-FGFVLERDMFESAILVTAVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLEYVGLST 201 FG + D +++ + S +L +QR L S G AL AI+ NE R + +G Sbjct: 146 LGFGLDMSGDNAFYWVVLAWLAASFIL---LQRLLASRFGLALNAIRQNERRAQAIGYPA 202 Query: 202 YQVLLIGYVISAALCGLSGALFAITQGLVTPEMGYWVRSGEYVFVAILGGIGH-PVGAFV 260 + L +VI+A + G++G+L ++ +P++ +W +SG + + LGG+G+ G Sbjct: 203 LRYKLAAFVIAAVIAGIAGSLIGMSNLFASPKLLHWSQSGILLVMVALGGVGYFYGGLLG 262 Query: 261 GAAIFEFVKLFSAAFLTGAWQMVLGVVLITMVFLAPAGLSALLVKKRALNVEGDQS 316 AA ++ S F WQ+ +G++L+ +V +AP G+S+L+ + L +G+Q Sbjct: 263 AAAFLLLEEVLSTHF--EYWQIYVGLILLLVVMVAPRGVSSLVSIGKTLK-QGEQH 315 >gi|300310993|ref|YP_003775085.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 408 Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 138/285 (48%), Gaps = 30/285 (10%) Query: 40 LGISILVR-SGQVSFGHAIFACAAGYAVAFAAKRW--THLDSIALLAVGTLFGGLLGAVI 96 LG++I+V +G + G+ F Y A + + T + + L A + L G ++ Sbjct: 117 LGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLTFWECVPLAAAAS---ALFGFLL 173 Query: 97 GSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIR-IARPTFFGFVLERD---- 151 G V+R RG + ++ L ++ +L +TGG DG+ I +PT FG V+ R+ Sbjct: 174 GFPVLRLRGDYLAIVTLGFGEIIRLLLNNMTSITGGPDGVSGIPKPTVFGLVMARNPVTE 233 Query: 152 -----------MFESAILVT-----AVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLE 195 ++ +V A+++ L + R LR G+A A++ +E Sbjct: 234 GGTTFHQLFGLSYQGGHMVIFLYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACR 293 Query: 196 YVGLSTYQVLLIGYVISAALCGLSGALFAITQGLVTPEMGYWVRSGEYVFVAILGGIGHP 255 +G++ +V L + + AA GL+G+ FA QGLVTPE ++ S + + +LGG+G Sbjct: 294 SLGINPTKVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQ 353 Query: 256 VGAFVGAAIFEFVKLFSAAFLTGAWQM-VLGVVLITMVFLAPAGL 299 +G + A + + + +F ++M + G+V++ M+ P GL Sbjct: 354 LGVILAAILLTVLPELARSF--AEYRMLIFGLVMVLMMMWRPQGL 396 >gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 628 Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 11/223 (4%) Query: 49 GQVSFGHAIFACAAGYAVAFAAKRWTHLDSIALLA-VGTLFGGLLGAVI-GSFVVRYRGI 106 G VSFGHA + YA A R +A+LA GT +L A++ G F VR G+ Sbjct: 372 GMVSFGHAAYFGLGAYAAALVTLRLQWPMPLAMLAGAGT---AMLAALLFGWFCVRLSGV 428 Query: 107 FFGMLNLALSMVLYSILGKFFELTGGTDGIRIARPTFFGFVLERDMFESAILVTAVVLSL 166 + ML LA + ++++ + ++ +LTGG++G+ + T + A+L +A+ + L Sbjct: 429 YLAMLTLAFAQIVWAAIYQWDDLTGGSNGL-VGLRTAAALASPLAYYYLALLCSALGVYL 487 Query: 167 LLGMLVQRYLRSVAGQALAAIKTNETRLEYVGLSTYQVLLIGYVISAALCGLSGALFAIT 226 L +R + + G AL A + R + +G+ + G+ ++ CGL+G LFA + Sbjct: 488 L-----RRVIHAPFGLALRAARDASGRAQALGMDVRALQWGGFALAGLFCGLAGVLFAFS 542 Query: 227 QGLVTPEMGYWVRSGEYVFVAILGGIGHPVGAFVGAAIFEFVK 269 +G ++PE+ RS + + + +LGG+ G +GA++F +++ Sbjct: 543 KGSISPEVAGVNRSVDGLVMVLLGGVQSLAGPLLGASVFTWLQ 585 >gi|300311879|ref|YP_003775971.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 358 Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 79/289 (27%), Positives = 137/289 (47%), Gaps = 29/289 (10%) Query: 37 LAALGISILV-RSGQVSFGHAIFACAAGYAVAFAAKRWTHLDSIALLAVGTLFGG---LL 92 LAALG+++L +GQ+S G A F YA A +D I ++A L GG L+ Sbjct: 61 LAALGLNVLTGYAGQLSLGSAAFMAVGAYA---AYNFQLRVDGIPIVATLLLSGGCAALV 117 Query: 93 GAVIGSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIRIARP--TFFGFVLER 150 G + G +R +G + + LA + L KF + + I+ P FFG ++ Sbjct: 118 GVLFGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFSNNSSSGVISTPKIDFFGIAIDT 177 Query: 151 DMFESAILVTAVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLEYVGLSTYQVLLIGYV 210 + + V AVV +L ++ + +RS G+A A++ + E +G+ + L + Sbjct: 178 PV-RKYLFVLAVVS--VLALVAKNLVRSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFA 234 Query: 211 ISAALCGLSGALFAITQ-GLVTPEMGYWVRSGEYVFVAILGGIGHPVGAFVGAAIFEFVK 269 +S+ CG++GAL+A G V P+ S +F+ I+GG+G +G+F+G+A + Sbjct: 235 VSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSILGSFLGSAFILLLP 294 Query: 270 L----------------FSAAFLTGAWQMVLGVVLITMVFLAPAGLSAL 302 + F+ A ++ MV G ++I + P GL+ L Sbjct: 295 IFLDNALPPLAALLHLPFTNATVSHIQMMVFGALIIFFLIAEPHGLARL 343 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.144 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 874,878 Number of extensions: 36394 Number of successful extensions: 299 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 278 Number of HSP's successfully gapped: 21 Length of query: 316 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 231 Effective length of database: 1,217,395 Effective search space: 281218245 Effective search space used: 281218245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)