BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0101.p (247 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 156 2e-39 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 150 9e-38 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 140 1e-34 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 135 3e-33 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 134 7e-33 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 137/244 (56%), Gaps = 4/244 (1%) Query: 6 LQTVNLKLAFGAVVVADGINFELHEGERLAVIGQNGAGKTTFINICTGLIQPTSGTVNFD 65 L+T L +G+ V I+ G R A+IG NGAGKTTFIN+ TG P+SG V F Sbjct: 12 LRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVWFG 71 Query: 66 GHNITKLAPRTIARRGLVRSFQLPQLFLEHTVRDCIRLAAAGKIGRLGIW--SALSDAVS 123 G +IT L +RG+ R+FQ+ LF TV + + LA + G W + S Sbjct: 72 GEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLAIQERRGLQYKWYQTVASQTEV 131 Query: 124 ASEVEHVLEMVGLRERADELSALLPEGQRKLLDIAMALVLDPKVLILDEPTSGVSSDEKH 183 E +L + L + A+ L+ L G+++L++IA+AL PKVL+LDEP +G+ S E Sbjct: 132 VDEAMALLASLKLAQEANSLTRNLAYGKQRLVEIALALATQPKVLLLDEPAAGIPSAESR 191 Query: 184 GLMKTIMGALDERRITAIFVEHDVDIVARYATRVAAWISGRIASDGTPEAVLNDPEIRKN 243 L + I A R +T +F+EHD+ +V R+A R+ + G++ +GTP + DP +++ Sbjct: 192 ELFEVI--AQLPREVTIVFIEHDMGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKEV 249 Query: 244 VIGE 247 +GE Sbjct: 250 YLGE 253 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 150 bits (379), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 137/245 (55%), Gaps = 2/245 (0%) Query: 4 AILQTVNLKLAFGAVVVADGINFELHEGERLAVIGQNGAGKTTFINICTGLIQPTSGTVN 63 ++LQ L +FG V + ++F L G+ LA+IG NGAGK+T N+ G ++P G V Sbjct: 2 SLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVL 61 Query: 64 FDGHNITKLAPRTIARRGLVRSFQLPQLFLEHTVRDCIRLAAAGKIGRLG-IWSALSDAV 122 DG +IT L R I RRG+ R+FQ+ F TV ++ A RL +W +D++ Sbjct: 62 LDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRP-ADSL 120 Query: 123 SASEVEHVLEMVGLRERADELSALLPEGQRKLLDIAMALVLDPKVLILDEPTSGVSSDEK 182 + +L+ VG+ +A A+L G K +++AMAL P++L++DEPT+G+++ E+ Sbjct: 121 FRQQAMELLDQVGMAAQAQRACAVLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQER 180 Query: 183 HGLMKTIMGALDERRITAIFVEHDVDIVARYATRVAAWISGRIASDGTPEAVLNDPEIRK 242 LM ++ER I +F EH +D+V +A R+ G++ +DG P V D +R+ Sbjct: 181 QALMALTRRLVNERGIAVLFTEHSMDVVFAHADRILVLARGQLVADGAPAVVRADARVRE 240 Query: 243 NVIGE 247 G Sbjct: 241 LYFGS 245 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 140 bits (352), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 137/251 (54%), Gaps = 10/251 (3%) Query: 5 ILQTVNLKLAFGAVVVADGINFELHEGERLAVIGQNGAGKTTFINICTGLIQPTSGTVNF 64 +LQ ++ FG + V G+NF + +GE +IG NGAGKTT N+ TGL++ +SG++ F Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 65 DGHNITKLAPRTIARRGLVRSFQLPQLFLEHT--------VRDCIRLAAAGKIGRLGIWS 116 + +I +AP I RG+ R+FQ ++F E T + D + A + LG + Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 117 ALSDAVSASEVEHVLEMVGLRERADELSALLPEGQRKLLDIAMALVLDPKVLILDEPTSG 176 +E +L V L +A L+ L G+++ L+ A AL PK+L+LDEP +G Sbjct: 122 NAEKEARERALE-LLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 Query: 177 VSSDEKHGLMKTIMGALDERRITAIFVEHDVDIVARYATRVAAWISGRIASDGTPEAVLN 236 ++ EK LM I+ + +R T +EHD+ V R+A G+I ++GTP+ + N Sbjct: 181 MNPAEKTELMSEIVN-IKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKN 239 Query: 237 DPEIRKNVIGE 247 + E+ + +G+ Sbjct: 240 NQEVIEAYLGK 250 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 1 VSQAILQTVNLKLAFGAVVVADGINFELHEGERLAVIGQNGAGKTTFINICTGLIQPTSG 60 +S+ ILQ VN+ +G +GI ++ G +VIG NGAGKTT + TG T G Sbjct: 1 MSRPILQAVNVTKRYGKFTAVNGITLDIEAGTVHSVIGPNGAGKTTLFHTLTGTTPITEG 60 Query: 61 TVNFDGHNITKLAPRTIARRGLVRSFQLPQLFLEHTVRDCIRLAAAGK--IGRLGIWS-A 117 ++ +G + L ++GL RSFQ+ LF +VR+ +RLAA G+ + L W A Sbjct: 61 SILVEGEEVAHLPGNRRVQKGLARSFQVTSLFPNLSVRENLRLAAQGRAPLAALNPWKRA 120 Query: 118 LSDAVSASEVEHVLEMVGLRERADELSALLPEGQRKLLDIAMALVLDPKVLILDEPTSGV 177 + + + + +L + L+ A A L GQ++ L++ MA+ PKV+ LDEPTSG+ Sbjct: 121 EQFSAACALADELLARLSLQAVAQRACAELSHGQQRRLEVGMAMAGRPKVIFLDEPTSGM 180 Query: 178 SSDEKHGLMKTIMGALDERRITAIFVEHDVDIVARYATRVAAWISGRIASDGTPEAVLND 237 D+ + + I G R T + +EH++DIV + R+ G+I + G P + +D Sbjct: 181 GIDDIAEMKQLIHGL--RRDYTVVLIEHNMDIVMDISDRITVMQLGQILAQGKPAEIRSD 238 Query: 238 PEIRKNVIG 246 +R+ +G Sbjct: 239 ERVRRAYLG 247 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 134 bits (337), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 137/253 (54%), Gaps = 9/253 (3%) Query: 3 QAILQTVNLKLAFGAVVVADGINFELHEGERLAVIGQNGAGKTTFINICTGLIQPTSGTV 62 + +L+ NL + FG ++ DG++ + E E A+IG NGAGKTT N +G +PTSG + Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 63 NFDGHNITKLAPRTIARRGLVRSFQLPQLFLEHTVRDCIRLAAAGKIGRLGIWSAL--SD 120 DG +I + +A++GLVR+FQ +LF TV + + +A ++ + S L + Sbjct: 66 MLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVN-TNLLSGLLKTP 124 Query: 121 AVSASEVE------HVLEMVGLRERADELSALLPEGQRKLLDIAMALVLDPKVLILDEPT 174 A SE E + L+ +GL A+ + L G ++ ++IA ++ P++L+LDEP Sbjct: 125 AYRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPA 184 Query: 175 SGVSSDEKHGLMKTIMGALDERRITAIFVEHDVDIVARYATRVAAWISGRIASDGTPEAV 234 +G++ EK L + I E + + +EHD+ ++ + R+ G+ GTPE V Sbjct: 185 AGLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQV 244 Query: 235 LNDPEIRKNVIGE 247 +D + K +GE Sbjct: 245 RSDERVIKAYLGE 257 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,016 Number of extensions: 33349 Number of successful extensions: 459 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 129 Length of query: 247 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 164 Effective length of database: 1,226,865 Effective search space: 201205860 Effective search space used: 201205860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)