BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0100.p (225 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC t... 133 1e-32 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 132 3e-32 gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC t... 131 4e-32 gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t... 120 6e-29 gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t... 120 1e-28 >gi|300311943|ref|YP_003776035.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 229 Score = 133 bits (334), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 12/222 (5%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 M K+ +++ +V+ D+ ++AV+GRNG GKTTL + +MG++PL+ G I Sbjct: 1 MFKVSQLASGYGQSKVIHDVDLSVAKEEIVAVMGRNGMGKTTLFKTLMGILPLRGGSISI 60 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGLP---KGQIDERLEQ 117 DGV+L S+ HQR G+ Y P+ R++F +V +N++ GLP KG++ + L Sbjct: 61 DGVELGSLESHQRVERGVAYVPQGRMIFSHMTVLENIQ-----TGLPAAAKGKVPDELYS 115 Query: 118 VLLAVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAES 177 + P L M R G LSGGQ + A+ RAL R++LLDEP +G+ P + + A S Sbjct: 116 LF---PVLYDMRTRKGGNLSGGQQQQLAIARALATNPRVLLLDEPTEGIQPSIIKDIARS 172 Query: 178 LRKLRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAAN 219 L+++R I L +VV+E S ++ D L +++G + + Sbjct: 173 LKEIRKIRA-LTIVVSEQVLSFTLEIADRFLVIDKGRFVYED 213 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 132 bits (331), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 19/226 (8%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 ML++ +++ LR ++ + G +L+++GRNG GKTTLL+ +MG++P+ G + F Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVL-----GLPKGQIDERL 115 +G D+ + HQR+ LGI Y P+ R +F +VE+N+ L KG++ E Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIKGEVYELF 120 Query: 116 EQVLLAVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPIL---AG 172 P LK ML R G LSGGQ + A+ RAL+A +L++LDEP +G+ P + G Sbjct: 121 -------PVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIG 173 Query: 173 EYAESLRKLRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAA 218 LR+ DI LC E R+L D + + RGE++AA Sbjct: 174 RVISLLRQRGDIGILLC----EQYFDFARELADTFVVMSRGEVVAA 215 >gi|300313283|ref|YP_003777375.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 131 bits (330), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 +L + +VS VL D++ G LA++GRNG GKT+LL +MGL L G I + Sbjct: 4 LLALDRVSAGYGQSIVLEDVSFTMQEGESLALLGRNGVGKTSLLITLMGLTRLHGGSIRW 63 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNLRFPCDVLGLPKGQIDERLEQVLL 120 G D+A V H+R+ G+G+ P++R MFP+ SVE++L G+ D L+++ Sbjct: 64 RGGDIARVATHKRAHAGLGWVPQERFMFPSLSVEEHLTVVER-----GGKWD--LQKIYQ 116 Query: 121 AVPQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAESLRK 180 P+L G+ LSGG+ ++ A+ RALM ++LLDEP +GLAPI+ E + +R+ Sbjct: 117 IFPRLHERRHNMGNQLSGGEQQMLAIARALMVSPSILLLDEPMEGLAPIIVQELLKVIRR 176 Query: 181 LRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAANDANA 223 L + V+V E + + L + L+RG ++ A+D+ + Sbjct: 177 LVS-EEGMSVIVVEQHARMALSLTQRAIVLDRGRIVHASDSQS 218 >gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 233 Score = 120 bits (302), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 12/222 (5%) Query: 1 MLKIQKVSVQIAGIRVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEF 60 +L++Q + A +L + E AG ++A++GRNGAGK+T L+A+MGL+ + G+I Sbjct: 5 LLQVQGLHGWYADAHILFGLDLEIRAGEVVALMGRNGAGKSTTLKALMGLLERRQGQIRL 64 Query: 61 DGVDLASVPGHQRSSLGIGYAPEDRVMFPTFSVEDNL---RFPCDVLGLPKGQIDERLEQ 117 G D+ + HQR+ LG+GY PEDR +F SV +NL R P P+ Q Sbjct: 65 AGRDIGKLAPHQRARLGLGYVPEDRRIFTELSVLENLETGRQP------PRPGAPHWTPQ 118 Query: 118 VLLAV-PQLKVMLPRSGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAE 176 L + P L M R G +SGG+ ++ + R LM RL+LLDEP +G+AP++ + A Sbjct: 119 ALFELFPNLGAMPQRLGGRMSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAA 178 Query: 177 SLRKLRDINPKLCVVVTESNRSLLRDLPDATLTLERGELMAA 218 +++L+ + +++ E N + D L++G ++AA Sbjct: 179 MIQELK--RSGIAILLCEQNLHFASLVCDRGYLLDQGRIVAA 218 >gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 120 bits (300), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 124/205 (60%), Gaps = 11/205 (5%) Query: 15 RVLRDIATEFTAGSLLAVVGRNGAGKTTLLRAIMGLIPLQHGRIEFDGVDLASVPGHQRS 74 RVL + G +++++GRNGAG++TLL+A+MGL+P G F+G D++ +P H + Sbjct: 21 RVLHGVDLTVQRGEIVSILGRNGAGRSTLLKALMGLLP-SRGDCRFEGRDISGLPTHAIA 79 Query: 75 SLGIGYAPEDRVMFPTFSVEDNL---RFPCDVLGLPKGQIDERLEQVLLAVPQLKVMLPR 131 LG+GY PE R +FPT SV NL R P G +G ++ + + A+ + + + Sbjct: 80 RLGMGYVPESREVFPTLSVAQNLLLGRKPGPQPG--RGWCEDDIHALFPALYKRRQV--- 134 Query: 132 SGSALSGGQGKIAALGRALMAGRRLVLLDEPFQGLAPILAGEYAESLRKLRDINPKLCVV 191 + +ALSGG+ ++ ALGRAL+ L+L+DEP +GLAP + + A +L++LR + V+ Sbjct: 135 AAAALSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELRTRG--VAVL 192 Query: 192 VTESNRSLLRDLPDATLTLERGELM 216 + E ++L +L + RGE++ Sbjct: 193 LVEQKQALALELSQRVYVMGRGEMV 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 675,842 Number of extensions: 28656 Number of successful extensions: 407 Number of sequences better than 1.0e-08: 113 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 117 Length of query: 225 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 143 Effective length of database: 1,231,600 Effective search space: 176118800 Effective search space used: 176118800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)