BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0090.p (369 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 451 e-128 gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 124 1e-29 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 110 1e-25 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 451 bits (1161), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/365 (59%), Positives = 269/365 (73%), Gaps = 2/365 (0%) Query: 1 MKLNSSSTDLFSPLNMGALSLANRIVMAPLTRSRMGSDGVPNELHARYYAQRASAGLIIS 60 M ++S ++DLF P+ +GA+ L NRIVMAPLTRSR + VP++L A YYAQRA AGLII+ Sbjct: 1 MSISSQNSDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQRAGAGLIIA 60 Query: 61 EATNISAQARGYALTPGIWTEEQVAGWKLVTDAVHAAGGRIVCQLWHVGRFSHVDLQPGG 120 EAT IS + +GYA TPGI+ + VA WK +TDAVHA GGRI QLWHVGR SH DLQPG Sbjct: 61 EATQISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRISHPDLQPGH 120 Query: 121 AAPVAPSAIRAEGQTYTENGMMDVSMPRALETSEIPGIIEQYRHAATCAKRAGFDGVEVH 180 A PVAPSA++ EGQ +TE+G PRALE +E+P I+EQY+ AA + +AGFDGVE+H Sbjct: 121 ALPVAPSAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQLSMQAGFDGVEIH 180 Query: 181 SANSYLLDQFLRDSTNKRSDQYGGSIENRSRLTLEVTAAVVDVWGHDRVGIRLSPVTPDA 240 +AN YLLDQFLRD TN+R+D YGGSIENR+RL LEV AV V +RVGIRLSP++P Sbjct: 181 AANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSERVGIRLSPISP-- 238 Query: 241 GNTPLDSQVMQTYGYLIEQLNRFQLAYMHFVEGATATSRVVPENVDLDALRELFKGPFIG 300 N DS + Y++EQLNRF+L Y+H VEGAT R VP DL LR+LFKG +I Sbjct: 239 ANDIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGGFDLQVLRDLFKGLYIA 298 Query: 301 NNNYDLELAVNRRAEGKVDAVAFGRPFIANPDLVRRLQEGAELAIASRETYYGNGAKGYT 360 NN YDL++A+ RA + D VAFGRP+IANPDLV+R GAELA ++ T YG GA GYT Sbjct: 299 NNGYDLDMALQARASNRADLVAFGRPWIANPDLVQRFLHGAELATFNQATLYGGGAAGYT 358 Query: 361 DWPTL 365 D+P + Sbjct: 359 DYPPM 363 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 124 bits (310), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/283 (33%), Positives = 144/283 (50%), Gaps = 15/283 (5%) Query: 7 STDLFSPLNMGALSLANRIVMAPLTRSRMGSDGVPNELHARYYAQRA--SAGLIISEATN 64 S+ LFSPL + ++L NRI ++P+ + DG N+ H + RA AGL++ EAT Sbjct: 2 SSHLFSPLPLRGVTLPNRIAVSPMCQYS-AEDGFVNDWHLVHLGSRAVGGAGLVLMEATA 60 Query: 65 ISAQARGYALTPGIWTEEQVAGWKLVTDAVHAAGGRIVCQLWHVGRFSHVDLQP--GGAA 122 + A+ R + GIW +E +A + +T + G QL H GR S + L+P G A Sbjct: 61 VVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSI-LRPWDGPAG 119 Query: 123 PVAPSAIRAEGQTYTENGMMD-VSMPRALETSEIPGIIEQYRHAATCAKRAGFDGVEVHS 181 V PSA Q + D S P+A+ +I +++ + AA A AGF +E+H Sbjct: 120 SVPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQRALAAGFKVIELHG 179 Query: 182 ANSYLLDQFLRDSTNKRSDQYGGSIENRSRLTLEVTAAVVDVWGHD-RVGIRLSPVT-PD 239 A+ YL QFL +N+RSD+YGGS ENR R LE+T A VW + + +RLS D Sbjct: 180 AHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLVRLSATDWVD 239 Query: 240 AGNTPLDSQVMQTYGYLIEQLNRFQLAYMHFVEGATATSRVVP 282 G TP ++ + ++L + + G A V+P Sbjct: 240 GGWTPEETVTLS------QRLRELGVDLVDVSSGGNAPKAVIP 276 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 150/334 (44%), Gaps = 17/334 (5%) Query: 10 LFSPLNMGALSLANRIVMAPLTRSRMGSDGVPNELHARYYAQ--RASAGLIISEATNISA 67 LF P + +SL NRI + P+ + M +G N+ H +YA R AGL+I EAT +S Sbjct: 4 LFQPFKLKDVSLRNRIAVPPMCQY-MAVEGKVNDWHLSHYASIARGGAGLVIVEATAVSP 62 Query: 68 QARGYALTPGIWTEEQVAGWKLVTDAVHAAGGRIVCQLWHVGRFSHVDLQPGGAAPVAPS 127 + R GIW++ + V A+ AAG Q+ H GR + + G +A Sbjct: 63 EGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIAAD 122 Query: 128 AIRAE---GQTYTENGMMDVSMPRALETSEIPGIIEQYRHAATCAKRAGFDGVEVHSANS 184 R + G +P+A+ +I + + + +AA A+ AGF+ +E+H A+ Sbjct: 123 DARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAVRAREAGFEWLELHFAHG 182 Query: 185 YLLDQFLRDSTNKRSDQYGGSIENRSRLTLEVTAAVVDVWG-HDRVGIRLSPVTPDAGNT 243 YL F N+R D YGGS+ENR+R LE AV +VW H + +R + D + Sbjct: 183 YLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEHLALTVRFGVLEYDGRD- 241 Query: 244 PLDSQVMQTYGYLIEQLNRFQLAYMHFVEGATATSRVVPENVDL-----DALRELFKGPF 298 + +M++ G ++ Q + + G T +P +RE P Sbjct: 242 --EETLMESIG-VVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGPIAKRVREEAAVPV 298 Query: 299 IGNNNYDL-ELAVNRRAEGKVDAVAFGRPFIANP 331 + LA +G++D V GR + NP Sbjct: 299 SSAWGFGTPALAEQAVKDGQLDLVMVGRSHLVNP 332 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,226,566 Number of extensions: 53253 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 3 Length of query: 369 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 282 Effective length of database: 1,207,925 Effective search space: 340634850 Effective search space used: 340634850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)