BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0087.p (291 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 135 4e-33 gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC tr... 127 1e-30 gi|300312237|ref|YP_003776329.1| amino acid ABC transporter perm... 120 2e-28 gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC t... 109 3e-25 gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC t... 109 3e-25 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 135 bits (340), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 160/280 (57%), Gaps = 9/280 (3%) Query: 12 GAIYGLIALGLTLIFGIMRVINFAHGTLLMVSMFISFMCVTKLGMNPYLTLVVVVPAMFC 71 G+ Y +++LGL +IFG++ VINFAHGTL M+ F+++M ++ LG+N ++ L+V + Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLNYWVMLIVAPILVGA 81 Query: 72 IGYLINAGLIQRVLNKESDVREPIGALVLTFGLSVLIENVFLAIFG--PNYHSVTTSFSN 129 G +I ++ R L K + L+LTFG++++IE +F +I+G +SV Sbjct: 82 FGIVIEKTML-RWLYKLDHLY----GLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQG 136 Query: 130 ETLEMGSVIVALPKLYAFILATVVAIIFYLFLHKSELGRIIRAVGQSRNTALLMGVNVPH 189 T +G +++ + + + + +V + + K+ LG +RA ++ G+NVP Sbjct: 137 AT-NLGFMVLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGINVPL 195 Query: 190 VFNIAFGIGLAVLGTAGVALIPFYNVHPSIGSIFGIKAFLTVLLGGLGSIPGALLGGLLI 249 + + +G G+A+ AGV P V P +GS I F V++GG+GSI G+++ GL++ Sbjct: 196 MVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITGLVL 255 Query: 250 GIVESLCTMWVPSTLSSVVVLYAFLLFLFIRPSGLFGSRH 289 G++E L ++ P LS+ VV + L +RP+GLFG Sbjct: 256 GLIEGLTRVFYPE-LSATVVFIIMAIVLMVRPAGLFGKEK 294 >gi|300310992|ref|YP_003775084.1| branched-chain aminoacid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 308 Score = 127 bits (318), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/292 (31%), Positives = 154/292 (52%), Gaps = 10/292 (3%) Query: 5 LIQGILIGAIYGLIALGLTLIFGIMRVINFAHGTLLMVSMFISFMCVTKLGMNPYLTLVV 64 L+ G+ +GAIY LIA+G T+++GI+ +INFAHG + M++ ++ + +T +G+ L + Sbjct: 12 LVNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIASYVGLVTLTAIGVQSGYPLPL 71 Query: 65 VVPAMFCIGYLINA---GLIQRVLNKESDVREPIGALVLTFGLSVLIENVFLAIFGPNYH 121 ++ + L+ ++RV + + L+ G+S+ ++N G Sbjct: 72 LLGGALIVSVLVTGLYGWTVERVAYRPLRGGPRLVPLISAIGMSIFLQNYVQIGQGARDM 131 Query: 122 SVTTSFSNE-TLEMGS---VIVALPKLYAFILATVVAIIFYLFLHKSELGRIIRAVGQSR 177 SV S +MGS V + ++ + V+ + LF+ +S +GR RA + Sbjct: 132 SVPVLISGALEFQMGSDFTVTIPYSRMVIVGVTLVLMVALTLFIARSRMGRACRACAEDM 191 Query: 178 NTALLMGVNVPHVFNIAFGIGLAVLGTAGVALIPFY--NVHPSIGSIFGIKAFLTVLLGG 235 A L+G++ V + F +G A+L G LI ++P IG I GIKAF +LGG Sbjct: 192 GMANLLGIDTNKVISFTFVLG-AMLAAVGGVLIALTIGKLNPYIGFIAGIKAFTAAVLGG 250 Query: 236 LGSIPGALLGGLLIGIVESLCTMWVPSTLSSVVVLYAFLLFLFIRPSGLFGS 287 +GSIPGA+LGG+L+G+ E+ ++PS VV +L L RP+GL G Sbjct: 251 IGSIPGAMLGGVLLGLAETFAAGYLPSEYKDVVSFGLLVLILLFRPTGLLGK 302 >gi|300312237|ref|YP_003776329.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 153/285 (53%), Gaps = 5/285 (1%) Query: 5 LIQGILIGAIYGLIALGLTLIFGIMRVINFAHGTLLMVSMFISFMCVTKLGMNPYLTLVV 64 LI + +G++Y L ALG TL+FG++ VIN +HG + M+ + + + V ++ + ++ L++ Sbjct: 6 LINALSLGSVYALFALGFTLVFGVLGVINLSHGAIFMLGSYAALLLVEQMALPLWVALLL 65 Query: 65 VVPAMFCIGYLINAGLIQRVLNKESDVREPIGALVLTFGLSVLIENVFLAIFG-PNYHSV 123 + A +G +I+ +++ + + + P ++ T G++++I N+ +FG N Sbjct: 66 AMVATGLLGLIIDVLVLKPLRKRNAPHLIP---MIATIGVAIMITNISQGLFGAENKRFP 122 Query: 124 TTSFSNETLEMGSVIVALPKLYAFILATVVAIIFYLFLHKSELGRIIRAVGQSRNTALLM 183 + E++ +G++ + ++ ++A V+ ++ + K++LGR +RA+ +S A L+ Sbjct: 123 QGTIPEESVSLGNLHITAVQVAIIVIAFVLMVVLLGVMRKTQLGRALRAIAESPKAAYLL 182 Query: 184 GVNVPHVFNI-AFGIGLAVLGTAGVALIPFYNVHPSIGSIFGIKAFLTVLLGGLGSIPGA 242 G+NV +F + +F + + F + P +G K ++LGG+G I GA Sbjct: 183 GINVEGLFLLTSFAAAALGGAAGVLVGVSFNAISPFMGQPMLHKGIAVIILGGMGDIRGA 242 Query: 243 LLGGLLIGIVESLCTMWVPSTLSSVVVLYAFLLFLFIRPSGLFGS 287 ++GGL +G E L ++ S V L L ++PSG+FG Sbjct: 243 MIGGLFLGFAEVLTVAYISSDFRDAVAFGLLFLILLVKPSGMFGK 287 >gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 161/298 (54%), Gaps = 15/298 (5%) Query: 5 LIQGILIGAIYGLIALGLTLIFGIMRVINFAHGTLLMVSMFI--SFMCVTKL---GMNPY 59 +I G+++G++Y LIALG T+++G++ +INFAHG +LMV + S + V + G+ Sbjct: 8 IINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVAPGLPGI 67 Query: 60 LTLVVVVPAMFCIGYLINAGLIQRVLNKESDVREPIGALVLTFGLSVLIENVFLAIFGPN 119 + LV+ + + +++ LI+R+ + + L+ G+S+L++ + + I+G + Sbjct: 68 VQLVIAIVGAIPVCIVVSL-LIERIAYRPLRNAPRLAPLITAIGVSILLQTLAMMIWGRS 126 Query: 120 YHSVTTSFSNETLEMGSVIVALPKLYAFILATVVAIIFYLFLHKSELGRIIRAVGQSRNT 179 ++ + + +++ ++ LA + + L + K+++GR +RA ++ Sbjct: 127 PLPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRAMRATAENPRI 186 Query: 180 ALLMGVNVPHVFNIAFGIGLAVLGTAGVALIPFYNVHP-SIGSIFGIKAFLTVLLGGLGS 238 A LMGV+ V + F IG + AGV Y+ ++G + G+KAF +LGG+G+ Sbjct: 187 AGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAVLGGIGN 246 Query: 239 IPGALLGGLLIGIVESLCTMWV--------PSTLSSVVVLYAFLLFLFIRPSGLFGSR 288 I GA+LGG+L+G++ESL ++ S + ++ L +RPSG+ G R Sbjct: 247 IYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGIMGER 304 >gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 109 bits (272), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/298 (27%), Positives = 161/298 (54%), Gaps = 15/298 (5%) Query: 5 LIQGILIGAIYGLIALGLTLIFGIMRVINFAHGTLLMVSMFI--SFMCVTKL---GMNPY 59 +I G+++G++Y LIALG T+++G++ +INFAHG +LMV + S + V + G+ Sbjct: 8 IINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVAPGLPGI 67 Query: 60 LTLVVVVPAMFCIGYLINAGLIQRVLNKESDVREPIGALVLTFGLSVLIENVFLAIFGPN 119 + LV+ + + +++ LI+R+ + + L+ G+S+L++ + + I+G + Sbjct: 68 VQLVIAIVGAIPVCIVVSL-LIERIAYRPLRNAPRLAPLITAIGVSILLQTLAMMIWGRS 126 Query: 120 YHSVTTSFSNETLEMGSVIVALPKLYAFILATVVAIIFYLFLHKSELGRIIRAVGQSRNT 179 ++ + + +++ ++ LA + + L + K+++GR +RA ++ Sbjct: 127 PLPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRAMRATAENPRI 186 Query: 180 ALLMGVNVPHVFNIAFGIGLAVLGTAGVALIPFYNVHP-SIGSIFGIKAFLTVLLGGLGS 238 A LMGV+ V + F IG + AGV Y+ ++G + G+KAF +LGG+G+ Sbjct: 187 AGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAVLGGIGN 246 Query: 239 IPGALLGGLLIGIVESLCTMWV--------PSTLSSVVVLYAFLLFLFIRPSGLFGSR 288 I GA+LGG+L+G++ESL ++ S + ++ L +RPSG+ G R Sbjct: 247 IYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGIMGER 304 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.148 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 653,427 Number of extensions: 23922 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 26 Length of query: 291 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 207 Effective length of database: 1,222,130 Effective search space: 252980910 Effective search space used: 252980910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)