BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0085.p (250 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 208 3e-55 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 198 4e-52 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 198 4e-52 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 191 4e-50 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 189 1e-49 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 208 bits (530), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 110/252 (43%), Positives = 166/252 (65%), Gaps = 15/252 (5%) Query: 13 LLTLDCLNKRFGGLVVTKDISLSVQEGQIFGIIGPNGAGKSTLFNEISGYIPPDSGRITF 72 LL L+ ++K FGGL V + ++ +V++G+IFG+IGPNGAGK+T+FN I+G + SG I F Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 73 DGVDITGRPPHELCKQGIGRTFQIVKPFPSRTVLDNVVVGAFARTSN------------R 120 + DI PH++ ++GI RTFQ ++ F T+L+NVVVG + R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 121 N---EAIANAEKIVHELGLGRRIGQIAKNLSIVDRKRLELAKALATQPKLLLLDEILAGL 177 N EA A +++ + L + +A +LS ++++LE A+ALAT+PKLLLLDE +AG+ Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 178 TPSEVEEAITLVRTIRDRGVTIVMIEHVMRAVMALCERVLVISYGEKIAEGTPSEVISHP 237 P+E E ++ + I+ RG TI MIEH MR VM LCER+ V+++G+ IAEGTP ++ ++ Sbjct: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 Query: 238 QVISAYLGDDHA 249 +VI AYLG + A Sbjct: 242 EVIEAYLGKEEA 253 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 198 bits (503), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 155/251 (61%), Gaps = 15/251 (5%) Query: 13 LLTLDCLNKRFGGLVVTKDISLSVQEGQIFGIIGPNGAGKSTLFNEISGYIPPDSGRITF 72 LL + ++KRFGGL + ++++ GQI+G+IGPNGAGK+T FN I+G PD+G Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 73 DGVDITGRPPHELCKQGIGRTFQIVKPFPSRTVLDNVVVGAFARTSN------------R 120 DG + PHE+ K GI RTFQ ++ F TVL+NV+VG RT R Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 Query: 121 NEAIA---NAEKIVHELGLGRRIGQIAKNLSIVDRKRLELAKALATQPKLLLLDEILAGL 177 E A ++K++ +G+G+ + A++LS D++RLE+A+ALAT P+LL LDE AG+ Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 178 TPSEVEEAITLVRTIRDRGVTIVMIEHVMRAVMALCERVLVISYGEKIAEGTPSEVISHP 237 +E L+ I+ G TI++IEH ++ +M LC R+ V+ YG+ IAEG P++V +P Sbjct: 185 NATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 Query: 238 QVISAYLGDDH 248 VI AYLG H Sbjct: 245 AVIEAYLGAGH 255 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 198 bits (503), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 156/251 (62%), Gaps = 15/251 (5%) Query: 13 LLTLDCLNKRFGGLVVTKDISLSVQEGQIFGIIGPNGAGKSTLFNEISGYIPPDSGRITF 72 LL + ++KRFGGL + ++++ GQI+G+IGPNGAGK+T FN I+G PD+G Sbjct: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFEL 64 Query: 73 DGVDITGRPPHELCKQGIGRTFQIVKPFPSRTVLDNVVVGAFART------------SNR 120 DG + PHE+ K GI RTFQ ++ F TVL+NV+VG RT + R Sbjct: 65 DGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAR 124 Query: 121 NEAIA---NAEKIVHELGLGRRIGQIAKNLSIVDRKRLELAKALATQPKLLLLDEILAGL 177 E A ++K++ +G+G+ + A++LS D++RLE+A+ALAT P+LL LDE AG+ Sbjct: 125 EEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGM 184 Query: 178 TPSEVEEAITLVRTIRDRGVTIVMIEHVMRAVMALCERVLVISYGEKIAEGTPSEVISHP 237 +E L+ I+ G TI++IEH ++ +M LC R+ V+ YG+ IAEG P++V +P Sbjct: 185 NATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 Query: 238 QVISAYLGDDH 248 VI AYLG H Sbjct: 245 AVIEAYLGAGH 255 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 191 bits (486), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/258 (39%), Positives = 160/258 (62%), Gaps = 15/258 (5%) Query: 7 PSTKPALLTLDCLNKRFGGLVVTKDISLSVQEGQIFGIIGPNGAGKSTLFNEISGYIPPD 66 P+ + +L + + ++FGGLV ++SL V G++ +IGPNGAGKSTLFN+ISG P Sbjct: 349 PTPQEVVLDVRSVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPT 408 Query: 67 SGRITFDGVDITGRPPHELCKQGIGRTFQIVKPFPSRTVLDNVVVGAF-----------A 115 SG + F G ++TGR + G+ R+FQ V+ P TVL+NV +GA+ Sbjct: 409 SGSVQFRGQEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASML 468 Query: 116 RTSNRNEA--IANAEKIVHELGLGRRIGQIAKNLSIVDRKRLELAKALATQPKLLLLDEI 173 R + EA +A A + + +GL ++ ++A LS+ ++ LE+A+ALA P LLLLDE Sbjct: 469 RLDRKEEARILAEAARQIERVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEP 528 Query: 174 LAGLTPSEVEEAITLVRTIRDRGVTIVMIEHVMRAVMALCERVLVISYGEKIAEGTPSEV 233 AGL E + L+R +R G+ I+++EH M VM L +R++V+ +G+KIAEG P+++ Sbjct: 529 AAGLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADI 588 Query: 234 ISHPQVISAYLG--DDHA 249 ++P V+ AYLG D+ A Sbjct: 589 QNNPAVLEAYLGVADEEA 606 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 189 bits (481), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/251 (40%), Positives = 154/251 (61%), Gaps = 16/251 (6%) Query: 13 LLTLDCLNKRFGGLVVTKDISLSVQEGQIFGIIGPNGAGKSTLFNEISGYIPPDSGRITF 72 +L + L+ RFGGL+ +SL+VQE ++F IIGPNGAGK+T+FN ISG+ P SG I Sbjct: 8 MLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIML 67 Query: 73 DGVDITGRPPHELCKQGIGRTFQIVKPFPSRTVLDNVVVGAF---------------ART 117 DG I +P H++ +QG+ RTFQ ++ F S TV++N++V A Sbjct: 68 DGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYR 127 Query: 118 SNRNEAIANAEKIVHELGLGRRIGQIAKNLSIVDRKRLELAKALATQPKLLLLDEILAGL 177 + EA+ A + +LGL + A LS ++R+E+A+ + T+P+LLLLDE AGL Sbjct: 128 KSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGL 187 Query: 178 TPSEVEEAITLV-RTIRDRGVTIVMIEHVMRAVMALCERVLVISYGEKIAEGTPSEVISH 236 P E +E L+ R R+ GV +++IEH M +M + +R+LV+ +G+ I GTP +V S Sbjct: 188 NPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSD 247 Query: 237 PQVISAYLGDD 247 +VI AYLG++ Sbjct: 248 ERVIKAYLGEE 258 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 758,575 Number of extensions: 31245 Number of successful extensions: 496 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 137 Length of query: 250 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 167 Effective length of database: 1,226,865 Effective search space: 204886455 Effective search space used: 204886455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)