BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0084.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 227 7e-61 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 218 5e-58 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 216 1e-57 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 216 1e-57 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 213 1e-56 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 227 bits (578), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 166/234 (70%), Gaps = 1/234 (0%) Query: 1 MLLNVQNLSVHYDGMQALAGVNLHVNEGEIVSILGSNGAGKTTFINSMSGLLKLTSGSID 60 M+L + HY ++AL GV+L+V +GEIV+++G+NGAGKTT + ++ G + +SG + Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 61 FEDKSVLDVTAFARVPLGIVQVPEGRRLFPLMTVEENLLLGSTHPAARKVRKESMEEVYT 120 FE + + + + G+ PEGRR+FP +TV ENL +G+ A+ + ++ +E V+ Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFF-ASNEAIEQGIEYVFG 119 Query: 121 LLPRLRERRTQIAKTLSGGEQQMVAIGRALQSQPKLLMFDEPSLGLSPLLVQELFALIKS 180 L PRL+ER Q A T+SGGEQQM+AIGRAL S+P+LL+ DEP+LGL+PL++ ++F +I++ Sbjct: 120 LFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRT 179 Query: 181 LNERGITILMVEQNVRKTLQIVDRSYVLENGHIVMEGTGKDLLDDDLIKKAFLG 234 + E G+T+ +VEQN K L + DR YVLENGH+VM TG +LL + ++KA+LG Sbjct: 180 IRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 218 bits (554), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 111/236 (47%), Positives = 162/236 (68%), Gaps = 3/236 (1%) Query: 2 LLNVQNLSVHYDGMQALAGVNLHVNEGEIVSILGSNGAGKTTFINSMSGLLKLTSGSIDF 61 +L V++LS Y ++ LAG++L V +G+IV+++G NGAGKTT ++++ G+L + G++ F Sbjct: 5 VLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLP-SRGAMAF 63 Query: 62 EDKSVLDVTAFARVPLGIVQVPEGRRLFPLMTVEENLLLGS--THPAARKVRKESMEEVY 119 + V G+ VPE R LF M +E+NL+LG+ + ++ ++EEVY Sbjct: 64 DGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLEEVY 123 Query: 120 TLLPRLRERRTQIAKTLSGGEQQMVAIGRALQSQPKLLMFDEPSLGLSPLLVQELFALIK 179 TL PRLRERR+Q A TLSGGE+QM+A+GRAL ++P+LLM DEPSLGL+PL+V+E+F +I Sbjct: 124 TLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIA 183 Query: 180 SLNERGITILMVEQNVRKTLQIVDRSYVLENGHIVMEGTGKDLLDDDLIKKAFLGM 235 L RG++IL+VEQN R LQ+ D YVLENG I M G L D + +A+LG+ Sbjct: 184 ELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGL 239 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 216 bits (551), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 165/235 (70%), Gaps = 2/235 (0%) Query: 2 LLNVQNLSVHYDGMQALAGVNLHVNEGEIVSILGSNGAGKTTFINSMSGLLKLT--SGSI 59 +L VQ LSV Y G+QA+ G++L VNEGE+V+++G+NGAGKTT + +++G L + G I Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 60 DFEDKSVLDVTAFARVPLGIVQVPEGRRLFPLMTVEENLLLGSTHPAARKVRKESMEEVY 119 ++ + + +F V + VPEGR +F M+++ENLL+G+ + +++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 120 TLLPRLRERRTQIAKTLSGGEQQMVAIGRALQSQPKLLMFDEPSLGLSPLLVQELFALIK 179 + PRL+ER Q+A TLSGGEQQM+A+ RAL S PKLL+ DEPS+GLSP++V+++F +I+ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 180 SLNERGITILMVEQNVRKTLQIVDRSYVLENGHIVMEGTGKDLLDDDLIKKAFLG 234 +++ +GITIL+VEQN + L+ R YV+E+G I M+G + +LDD +K A+LG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 216 bits (551), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 165/235 (70%), Gaps = 2/235 (0%) Query: 2 LLNVQNLSVHYDGMQALAGVNLHVNEGEIVSILGSNGAGKTTFINSMSGLLKLT--SGSI 59 +L VQ LSV Y G+QA+ G++L VNEGE+V+++G+NGAGKTT + +++G L + G I Sbjct: 5 ILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRVEGHI 64 Query: 60 DFEDKSVLDVTAFARVPLGIVQVPEGRRLFPLMTVEENLLLGSTHPAARKVRKESMEEVY 119 ++ + + +F V + VPEGR +F M+++ENLL+G+ + +++ + Sbjct: 65 EYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADIDKWF 124 Query: 120 TLLPRLRERRTQIAKTLSGGEQQMVAIGRALQSQPKLLMFDEPSLGLSPLLVQELFALIK 179 + PRL+ER Q+A TLSGGEQQM+A+ RAL S PKLL+ DEPS+GLSP++V+++F +I+ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 180 SLNERGITILMVEQNVRKTLQIVDRSYVLENGHIVMEGTGKDLLDDDLIKKAFLG 234 +++ +GITIL+VEQN + L+ R YV+E+G I M+G + +LDD +K A+LG Sbjct: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLG 239 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 164/233 (70%) Query: 2 LLNVQNLSVHYDGMQALAGVNLHVNEGEIVSILGSNGAGKTTFINSMSGLLKLTSGSIDF 61 +L V++L+V Y ++A+ G++L +NEGEI +++G+NGAGK+T + ++SGL+K G + Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 62 EDKSVLDVTAFARVPLGIVQVPEGRRLFPLMTVEENLLLGSTHPAARKVRKESMEEVYTL 121 + +L ++ V G+VQV EGR +TVEENL LG+ + +E VY+L Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSL 129 Query: 122 LPRLRERRTQIAKTLSGGEQQMVAIGRALQSQPKLLMFDEPSLGLSPLLVQELFALIKSL 181 P L+ R +A LSGGEQQM+AIGRAL ++PK+L+ DEPS+GL+PL++QE+F +++ + Sbjct: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 Query: 182 NERGITILMVEQNVRKTLQIVDRSYVLENGHIVMEGTGKDLLDDDLIKKAFLG 234 N+ G+T+L+VEQNVR+ L+I R YVLE G IV+E +G +LL + + +A+LG Sbjct: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 650,026 Number of extensions: 25813 Number of successful extensions: 453 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 284 Number of HSP's successfully gapped: 143 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)