BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0077.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine...    60   1e-10
gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine...    59   4e-10

>gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 19/157 (12%)

Query: 6   LQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKR-LPLSPAGRSLYWTGLN 64
           L+G  VI     IAAP     LA LGA VI+++ PG G D+ R       G S ++   N
Sbjct: 8   LEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVG-DFARGYDSRVNGLSSHFVWTN 66

Query: 65  KGKRSLAIDFRRPEGKELVQELVTRADTGQTHGGMLLTNIGT-----TWLSHALLAAKRP 119
           + K SL ++ +  EG+ ++ +L+ +AD       +L+ N+         LS   L A+ P
Sbjct: 67  RSKESLTLNLKDEEGRRIIDQLLQQAD-------VLVQNLAPGAAAGLGLSAQALHARHP 119

Query: 120 DLISCTIEGN-PDG----TTAVDYTVNCAAGFPFMTG 151
            LI C I G   DG      A D  +   AGF  +TG
Sbjct: 120 RLIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTG 156


>gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine
          dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 58.9 bits (141), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)

Query: 4  GLLQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKRLPLSPAGRSLYWTGL 63
          G L G +V+E    IA P     LA+ GADVI+V+ PG G   ++  +   G SL+W+  
Sbjct: 9  GPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQ 68

Query: 64 NKGKRSLAIDFRRPEGKELVQELVTRADT 92
           + K+S+ ++ +    +E+ ++L   AD 
Sbjct: 69 ARNKKSITLNMKDERAQEIARKLALEADV 97


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 740,219
Number of extensions: 29801
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)