BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0075.p (412 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 276 2e-75 gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 140 2e-34 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 65 1e-11 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 276 bits (707), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 153/417 (36%), Positives = 236/417 (56%), Gaps = 21/417 (5%) Query: 13 SATPNKGALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGD 72 + T G L+ ++VL++ T +A PFC +LA+FGA+VIKVE P GD LR++ + + G Sbjct: 3 TGTSKPGPLAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKD-GT 61 Query: 73 SLVWLSEARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAIN 132 SL W +ARNKK+ITL+++ + ++ R+L ++D+++EN+RPG LEKW LG+E+L+ +N Sbjct: 62 SLWWSVQARNKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLN 121 Query: 133 PKLIMLRISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMW 192 P IM+R+S YGQTGP PGF I + G+ +++G D PPV G S+ D ++ + Sbjct: 122 PATIMVRLSGYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIG-ISIGDSIAALH 180 Query: 193 GAIGVLTALRERDRS--------------GIGQFIDLGLYESVFRLLDEIAPAYAKYGTV 238 G IG + ALR RD + G GQ +D+ LYE+VF +++ + P + G V Sbjct: 181 GVIGAMMALRHRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVV 240 Query: 239 RERMGADTVNVVPHSHYRTGSGEWVALACTNDKMFERLAVVMGQPELAMQ--YPTSAVRV 296 RER G +VP + Y TG G + +A D +F+RL +G+ ++A + RV Sbjct: 241 RERTGGALPGIVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGREDMANDPGLARNDGRV 300 Query: 297 ENRALINKLVGDWIGSKQLADVTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDP 356 I+ + W ++ + AT A VP +IYS+K++ D Q+ AR +M Sbjct: 301 PRTEEIDAAIQQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLAR-DMFEQHQF 359 Query: 357 RVGELV-LPAPVPRLSETPATFRHAGRSLGADNLDVYSQLLGMTQEQLKSAAASGVI 412 G V LP P++SETP + G LGA + D Q LG + +K GV+ Sbjct: 360 ADGTPVKLPGITPKMSETPGQTKWLGPELGAHS-DEILQSLGYDEAHIKMLRDQGVV 415 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 187/387 (48%), Gaps = 21/387 (5%) Query: 15 TPNKGALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGT-ITECGDS 73 +P+ L + V+ + +AAPFC LAD GA VIK+E+P GD R + + + Sbjct: 2 SPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSH 61 Query: 74 LVWLSEARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINP 133 VW + R+K+++TL+L+ +G ++ +L+ Q+D++++N PG GL + L A +P Sbjct: 62 FVWTN--RSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHP 119 Query: 134 KLIMLRISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMWG 193 +LI+ IS YG+ GP + + + + AG + G D VV S+AD +GM+ Sbjct: 120 RLIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDD--VVKAGCSIADIAAGMYA 177 Query: 194 AIGVLTAL---RERDRSGIGQFIDLGLYESVFRLLDEIAPAYAKY--GTVRERMGADTVN 248 +L AL R G G IDL + ES+ + P Y Y + R GA+ Sbjct: 178 YSNILAALIKRGREGREGRGSHIDLSMLESLAEWMS--FPLYYAYQGASAPLRSGAEHAT 235 Query: 249 VVPHSHYRTGSGEWVALACTNDKMFERLA-VVMGQPELA--MQYPTSAVRVENRALINKL 305 + P+ + G G+ V L N++ ++ V+ LA ++ ++A R E+R ++ +L Sbjct: 236 IYPYGPFSAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQL 295 Query: 306 VGDWIGSKQLADVTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDP--RVGELVL 363 + D V A + A++ +++E+++ Q AR V P +V L+ Sbjct: 296 ILDVFAGLSAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEVATPVGKVAALLP 355 Query: 364 PAPVP----RLSETPATFRHAGRSLGA 386 P R+ PA +H L A Sbjct: 356 PGANDSYDYRMEAIPALGQHTESILSA 382 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 13/146 (8%) Query: 21 LSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGDSLVWLSEA 80 L +RVLD+ +A P LA GAEV++++ P G + + T+ E Sbjct: 208 LRGIRVLDLTRILAGPVATRFLAGLGAEVLRID-PYGWE---EPNTVPEV---------V 254 Query: 81 RNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINPKLIMLRI 140 K+ L+L+ P R L+ +DI++ +R L K GL + R +NP LI + + Sbjct: 255 LGKRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVSL 314 Query: 141 SAYGQTGPKSGEPGFARIAHAFAGLS 166 AYG +G GF + G++ Sbjct: 315 DAYGWSGAWQCRRGFDSLIQMSTGIA 340 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,375,408 Number of extensions: 61979 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 3 Length of query: 412 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 324 Effective length of database: 1,203,190 Effective search space: 389833560 Effective search space used: 389833560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)