BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0072.p (455 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H... 232 5e-62 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 219 3e-58 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 207 2e-54 gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herba... 135 6e-33 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 130 3e-31 >gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 324 Score = 232 bits (592), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 122/281 (43%), Positives = 174/281 (61%), Gaps = 1/281 (0%) Query: 1 MQWVTAPVVAPAAGEVRIRHEAIGVDYIDTQIRGGLLPANLPTGLGFAGVGIAEEVGAGV 60 M++V V P AGEVRIRH A+G+++ID R GL P LP GLG G E VGAGV Sbjct: 16 MEYVDVEVGEPGAGEVRIRHAAVGLNFIDCYFRAGLYPQPLPAGLGQEAAGTIEAVGAGV 75 Query: 61 DHLKKGERVAYMYFTAGSYAEERIVPADRVIRLPDQSLSAELAAGALFRGLTAWYLSTRL 120 K G+RVAY G+YAEER++PAD +++LPD ++S + AA + +G+T YL + Sbjct: 76 SGFKVGDRVAYAGRPNGAYAEERVMPADILVKLPD-AISFDTAAAMMLQGMTVQYLLRQT 134 Query: 121 RPIGKGDVALVHAAAGGVGLILVQWLKHLGVTVVGTVDSEEKAQALRDFGCPHQVILPDG 180 + GD L HAAAGG+GLI QW + LGV ++GTV S+EKA G H + Sbjct: 135 YAVQPGDTILFHAAAGGIGLIACQWARALGVNLIGTVSSDEKAALALQHGAAHVINYKTE 194 Query: 181 DFVAKVKEVSGGKGAAIVYEAIGAETFARSLDCAQRFGLVASYGWPSGDPGSVSLMDLRA 240 +FV +VKE++GG+G +VY++IG +TF SLDC + G++ S+G SG + +L + Sbjct: 195 NFVERVKELTGGRGVQVVYDSIGKDTFLGSLDCLRPRGMMVSFGNASGPVAPFGVSELAS 254 Query: 241 KGSLFVTRPTVTQYTAEAEDFRAWACDVRDAARCNAVVAEV 281 +GSLF+TRP++ YT+ + A A D+ D N + E+ Sbjct: 255 RGSLFLTRPSLGNYTSTRAELDATAGDLFDMVLGNKISIEI 295 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 99/189 (52%), Positives = 139/189 (73%) Query: 267 DVRDAARCNAVVAEVVAALGRVDTLVNNAGVSQAHRIMDSSPDDYDIVMDVSLRGAYHMS 326 DV D A C A ++ GR+D LVNNAG++Q + ++ + DYD ++DVSLRG +MS Sbjct: 61 DVTDKASCETAAAAILQQFGRIDILVNNAGITQPVKTLEITGADYDRILDVSLRGTLYMS 120 Query: 327 RAVIPGMRSKKSGTIVCMGSVAGQRGGGILGGPHYAAAKGGVQSLAKAMARELGPDGIRV 386 +AV+P MR++++G+I+C+ SV+ QRGGGILGGPHY+AAK GV LA+AMARE GP+GIRV Sbjct: 121 QAVLPAMRAQQNGSIICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRV 180 Query: 387 NAVAPGLVDTELLIGKIDDSGKQRVAETTPLGRLAKPLDIANCILFLSSDMSAYVTGVVL 446 N++ PGL+ T+++ GK+ + K +AET PL RL + DI +FL SD+S Y TG+ L Sbjct: 181 NSITPGLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLGSDLSQYCTGITL 240 Query: 447 DINGGLHIH 455 D+NGG+ IH Sbjct: 241 DVNGGMLIH 249 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 102/189 (53%), Positives = 137/189 (72%) Query: 267 DVRDAARCNAVVAEVVAALGRVDTLVNNAGVSQAHRIMDSSPDDYDIVMDVSLRGAYHMS 326 DV D A C A A V+ GR+D LVNNAGV+Q ++++ + DYD ++DVSLRG +MS Sbjct: 61 DVTDKAACEAAAAAVLKQFGRIDILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLYMS 120 Query: 327 RAVIPGMRSKKSGTIVCMGSVAGQRGGGILGGPHYAAAKGGVQSLAKAMARELGPDGIRV 386 +AV+P M++++SG+IVC+ SV+ QRGGGILGGPHY+AAK GV LA+AMARE GP GIRV Sbjct: 121 QAVLPAMQAQQSGSIVCISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRV 180 Query: 387 NAVAPGLVDTELLIGKIDDSGKQRVAETTPLGRLAKPLDIANCILFLSSDMSAYVTGVVL 446 N + PGL+ T++ + K +A+T PLGRL P D+ +FL+SD+S Y TGV L Sbjct: 181 NCITPGLISTDINKDILSAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTL 240 Query: 447 DINGGLHIH 455 D+NGG+ IH Sbjct: 241 DVNGGMLIH 249 >gi|300312612|ref|YP_003776704.1| 3-ketoacyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 77/191 (40%), Positives = 119/191 (62%), Gaps = 3/191 (1%) Query: 266 CDVRDAARCNAVVAEVVAALGRVDTLVNNAGVSQAHRIMDSSPDD-YDIVMDVSLRGAYH 324 DVRD + NA VA+ VA +GR+D L+NNAG +++ D+ +D +++++ R Sbjct: 63 ADVRDTSAINAAVAKAVAQMGRIDVLINNAGALVKRAPLETVTDELFDDIININARSVVA 122 Query: 325 MSRAVIPGMRSKKSGTIVCMGSVAGQRGGGILGGPHYAAAKGGVQSLAKAMARELGPDGI 384 +RAVIP MR++ G I+ + SVA + GGG G YAA+KG V +L + MA+EL D I Sbjct: 123 FTRAVIPVMRAQGGGNIINVTSVAARHGGG-PGALIYAASKGFVSTLTRGMAKELLADKI 181 Query: 385 RVNAVAPGLVDTELLIGKIDDSGKQRVAETTPLGRLAKPLDIANCILFLSSD-MSAYVTG 443 RVNAVAPG++ T + +T P+GR+ +P + + L+L+S+ MS YVTG Sbjct: 182 RVNAVAPGVIMTPFQERFTTPEQLEGFRKTIPMGRIGEPDECSGAFLYLASEQMSGYVTG 241 Query: 444 VVLDINGGLHI 454 ++D+NGG ++ Sbjct: 242 QIIDVNGGQYM 252 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 5/206 (2%) Query: 251 VTQYTAEA--EDFRAWACDVRDAARCNAVVAEVVAALGRVDTLVNNAGVSQAHRIMDSSP 308 +T+Y A E R +V DA A+V +V G + LVNNAG++Q M Sbjct: 48 ITEYLAALGPEAGRGAVLNVNDAEASVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKD 107 Query: 309 DDYDIVMDVSLRGAYHMSRAVIPGMRSKKSGTIVCMGSVAGQRGGGILGGPHYAAAKGGV 368 +++D V+ +L +SRAV+ GM ++G I+ + SV G+ G G +YAAAK GV Sbjct: 108 EEWDSVIATNLTAVGRLSRAVLRGMMKARTGRIINITSVVGEAGNP--GQMNYAAAKAGV 165 Query: 369 QSLAKAMARELGPDGIRVNAVAPGLVDTELLIGKIDDSGKQRVAETTPLGRLAKPLDIAN 428 +++A+ARE+G I VN VAPG +DT+ + +++ + + PLGRL +IA Sbjct: 166 AGMSRALAREIGSRNITVNCVAPGFIDTD-MTRALNEQQSAAILQQIPLGRLGAAEEIAY 224 Query: 429 CILFLSSDMSAYVTGVVLDINGGLHI 454 + FL+S +AY+TG L++NGG+++ Sbjct: 225 AVAFLASPQAAYITGTTLNVNGGMYM 250 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,433,477 Number of extensions: 60563 Number of successful extensions: 373 Number of sequences better than 1.0e-08: 51 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 51 Length of query: 455 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 367 Effective length of database: 1,203,190 Effective search space: 441570730 Effective search space used: 441570730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)