BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0070.p
         (330 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312281|ref|YP_003776373.1| citrate lyase beta subunit [Her...   342   3e-95

>gi|300312281|ref|YP_003776373.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  342 bits (877), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 167/317 (52%), Positives = 220/317 (69%), Gaps = 1/317 (0%)

Query: 5   VHPEDALFMGEKTFPPLPVCEHFAGNEKLIRKALQIQERLGPVFDITCDCEDGAQAGDEI 64
           +HP   LF G +    LPVC+H+AG+EKL+RK++ +Q+ LGP+FDIT DCEDGA AG+E 
Sbjct: 1   MHPSQVLFPGAQQPVLLPVCDHYAGSEKLMRKSMALQQELGPLFDITFDCEDGAAAGNET 60

Query: 65  GHASMVAELVRTASNSDGRIGVRIHDRSHASWRSDVDIVVGRAASELAYVTIPKSTSVAG 124
            HA +VA L+    N   RIG R+HD SH  +  DV I+ G AA ELAYV +PK   +  
Sbjct: 61  AHAELVAALITGPDNVHRRIGARLHDVSHPHFEQDVAILCGAAARELAYVMLPKPEGIDD 120

Query: 125 ARECIDYIQQTARSAGRATPLPVHILVETHAALRHVYALAELPHVEVLDFGLMDFVSSHH 184
               ++ IQ+ AR+AGR+  LPV +LVETH AL   + +A LP V+ L FG+MDFVS+H+
Sbjct: 121 VLRALESIQRAARAAGRSD-LPVQVLVETHGALADAWKIAALPQVQSLSFGVMDFVSAHY 179

Query: 185 GAIGADALRSPGQFEHALLTRAKADVVAAALAAGVVPSHNVCLNLRDAAVIRGDALRASR 244
           GAI   A+RSPGQF+H L+ RAK D+ AA  A G VPSHNV  ++++ A +  DA RA++
Sbjct: 180 GAIPGSAMRSPGQFDHPLVRRAKLDISAACHAHGKVPSHNVTTDIKNPAAVADDACRAAQ 239

Query: 245 QFGFQRMWSIHPSQIEPIVAALRPDMNEVEDASAILVAAQDNQWGPIQFKGELHDRATYR 304
           +FG+ RMWSIHP QI PIV A+ P   E + A+ IL+ AQ  QWGPIQ  G LHDRA+YR
Sbjct: 240 EFGYTRMWSIHPDQIRPIVQAMSPATEEADLAAQILLKAQAVQWGPIQHLGNLHDRASYR 299

Query: 305 YFWSLLKRGHSTCAPLP 321
           Y+WS+L+R H+T   LP
Sbjct: 300 YYWSILQRAHATGVTLP 316


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,007,421
Number of extensions: 38711
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 2
Length of query: 330
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,212,660
Effective search space: 295889040
Effective search space used: 295889040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)