BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0069.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 255 5e-69 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 242 6e-65 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 218 1e-57 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 217 2e-57 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 198 1e-51 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 255 bits (652), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 168/502 (33%), Positives = 280/502 (55%), Gaps = 27/502 (5%) Query: 26 ISYANQAFARATGYTLEEVIGS--SFLRYSDLTTPKIIGEDIRATVLGGQRWEGVLAVKC 83 I+Y N F +G+ E++G+ + +R+ D+ P D+ AT+ GG W G++ + Sbjct: 30 ITYVNPYFIEISGFEENELLGAPQNLIRHPDM--PAEAFADMWATIKGGTPWTGLVKNRS 87 Query: 84 RDGSTFWSTTSISPWYENGKLTGSTAVRTMASEHEINKTKKLYKRITT-HPKIFGIRAGK 142 ++G +W +++P ENG++ G +VRT + +KLY I K + G+ Sbjct: 88 KNGDHYWVRANVTPIRENGQIVGYMSVRTKPERDAVAGAEKLYASIRRGQAKGIALHRGE 147 Query: 143 LVFRGIAAGLN----LFLWRRVSVAIALCIAIPCATTL-----LFTYFFSESTAQISFNK 193 +V G+A L + L R+++++ + +AI A + L ++ S A + Sbjct: 148 VVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQLAVVVAGMAALHQWWISALAAAAAL-- 205 Query: 194 LLLISSIVSIVSVGAVLALAYQTWFLPLRKSINELHLISSGELEGQNEHKAAGDLGLLEN 253 SIV +++ L PL ++++ H I+ G+L + E +LG L Sbjct: 206 ----LSIVQWIALRNAL-------IKPLHQALDITHAITGGDLSVRIETTRHDELGRLLR 254 Query: 254 ALTLMRKSLISMIEEIRSGISSMSIASGELSMGNLDLSRRTESQAASTAEITSGLGELIH 313 +L M +L ++I ++RS + ++++A+ E++ GNLDLSRRTE+QAA+ E S + EL Sbjct: 255 SLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHELAS 314 Query: 314 MVAETANIARNAEKCASEAQNISEEGIQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQ 373 V + A+ A A A A I+ G AV++ M EI ESS ++ ++S I+SIA Q Sbjct: 315 TVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHKIVDIISLIDSIAFQ 374 Query: 374 TNLLALNAAVEAARAGQHGRGFAVVAKEVRLLATRSVEATENIKDLIKNSMQRTNAGQVK 433 TN+LALNAAVEAARAG+ GRGFAVVA EVR LA RS A + IK+LI S+++ + G + Sbjct: 375 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDASVEKVDIGNRQ 434 Query: 434 VSAAASAIDQLSKAISTVDTMMVKVASGTKEQNTALDKIHHALEDIDQTTQQNAALVEQI 493 V A S + + ++ V +M ++ T++Q+ ++++H A+ +D +TQQNA+LVE+ Sbjct: 435 VEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEA 494 Query: 494 YASTEMLTSQSKSLSTTVSVFR 515 A+ L Q+ L +SVF+ Sbjct: 495 AAAAGSLQEQTVRLLQAISVFK 516 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 242 bits (617), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 172/507 (33%), Positives = 280/507 (55%), Gaps = 32/507 (6%) Query: 26 ISYANQAFARATGYTLEEVIGS--SFLRYSDLTTPKIIGEDIRATVLGGQRWEGVLAVKC 83 I Y N F +G+ EE+IG+ + +R+ ++ P+ D+ AT+ G W G++ +C Sbjct: 30 ILYVNPYFIEISGFEEEELIGAPQNIVRHPEM--PREAFADMWATLKEGLPWNGLVKNRC 87 Query: 84 RDGSTFWSTTSISPWYENGKLTGSTAVRTMASEHEINKTKKLYKRITTHPKIFGIRAGKL 143 ++G +W +++P ENG+ G +VRT S ++ + Y++ + G G Sbjct: 88 KNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAAEAAYRKFSA-----GQARGLR 142 Query: 144 VFRGIAAGLNLFLW----RRVSVAIALCIAIPCATTLLFTYFFSESTAQISFNKLLLISS 199 V RG L W R + VA L + TL+F ++ N ++ Sbjct: 143 VHRGAVVRTGLTGWLQGLRELPVARRLGWTM-GVLTLMFIL-----GGAVAGNAVMSAGG 196 Query: 200 IVSIV----SVGAVLALAYQTWFL-------PLRKSINELHLISSGELEGQNEHKAAGDL 248 V + GA++ LA +W + PL+++I +H ++ G+L+ + A GD+ Sbjct: 197 SPFAVWLGTAAGALMLLA--SWAMLHASIVAPLQRAIKAVHGLAGGDLDSHIDTTARGDM 254 Query: 249 GLLENALTLMRKSLISMIEEIRSGISSMSIASGELSMGNLDLSRRTESQAASTAEITSGL 308 GLL AL + +L ++I ++R + SM+I++GE++ GN+DLS RTE+QA++ E S + Sbjct: 255 GLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRTEAQASALEETASSV 314 Query: 309 GELIHMVAETANIARNAEKCASEAQNISEEGIQAVSAAVKCMAEIVESSRQMNSVVSTIE 368 E V + A+ A NA++ A A I++ G +V + M EI +S ++ ++ I+ Sbjct: 315 EEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEIDAASHKIVDIIGLID 374 Query: 369 SIAAQTNLLALNAAVEAARAGQHGRGFAVVAKEVRLLATRSVEATENIKDLIKNSMQRTN 428 I+ QTN+LALNAAVEAARAG+ GRGFAVVA EVR LA RS A ++IK LI +S + Sbjct: 375 GISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAKDIKGLIDDSRAKVE 434 Query: 429 AGQVKVSAAASAIDQLSKAISTVDTMMVKVASGTKEQNTALDKIHHALEDIDQTTQQNAA 488 +G V A A+ +L A+ + M ++ + EQ+ +++++ A+ ID+TTQQNAA Sbjct: 435 SGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAA 494 Query: 489 LVEQIYASTEMLTSQSKSLSTTVSVFR 515 LVEQ A+ E L Q+ LS VSVF+ Sbjct: 495 LVEQAAAAAENLRDQAVKLSQAVSVFK 521 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 218 bits (554), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 187/297 (62%) Query: 220 PLRKSINELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIA 279 PLR + HLI++G+L ++ + G L AL M SL ++ ++RSG +++ A Sbjct: 219 PLRSAGEFAHLIAAGDLTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATA 278 Query: 280 SGELSMGNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEG 339 SG++S GNLDLS RTE QA+S E S + EL V + A AR A + A A I+EEG Sbjct: 279 SGQISSGNLDLSSRTEEQASSLEETASAMEELTSTVRQNAENARQANQLALSASTIAEEG 338 Query: 340 IQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVA 399 + VS ++ M I SS+++ ++S I+SIA QTN+LALNAAVEAARAG+ GRGFAVVA Sbjct: 339 GKVVSQVIETMGSIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVA 398 Query: 400 KEVRLLATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVA 459 EVR LA RS A + IK LI NS+Q+ G V A I ++ ++ V +M +++ Sbjct: 399 TEVRSLAQRSATAAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEIS 458 Query: 460 SGTKEQNTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 + + EQ +++++ A+ +D+ TQQNAALVE+ ++++ L+ Q++ LS V VFR Sbjct: 459 AASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 217 bits (553), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/322 (40%), Positives = 194/322 (60%), Gaps = 7/322 (2%) Query: 202 SIVSVGAVLALAYQTWFL-------PLRKSINELHLISSGELEGQNEHKAAGDLGLLENA 254 SIV++ A L LA+ +W+ P+++++ I+SG+L + ++G L Sbjct: 191 SIVAIVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIASGDLTEAVHVHSRNEMGQLLEG 250 Query: 255 LTLMRKSLISMIEEIRSGISSMSIASGELSMGNLDLSRRTESQAASTAEITSGLGELIHM 314 L M++SL ++ +RSG ++S A+ E++ GNLDLS RTE QAAS E S + EL Sbjct: 251 LKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSSRTEQQAASLEETASSMEELTST 310 Query: 315 VAETANIARNAEKCASEAQNISEEGIQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQT 374 V A+ AR A A A I+ +G V V+ M EI SS ++ +VS I+ IA QT Sbjct: 311 VKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRASSAKITDIVSIIDGIAFQT 370 Query: 375 NLLALNAAVEAARAGQHGRGFAVVAKEVRLLATRSVEATENIKDLIKNSMQRTNAGQVKV 434 N+LALNAAVEAARAG+ GRGFAVVA EVR LA RS A + IK+LI +S+ R AG V Sbjct: 371 NILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSVDRVQAGSELV 430 Query: 435 SAAASAIDQLSKAISTVDTMMVKVASGTKEQNTALDKIHHALEDIDQTTQQNAALVEQIY 494 A + + A+ V +M ++++ + EQ+ +D++ HA+ +D+ TQQNAALVEQ Sbjct: 431 GQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQQNAALVEQAS 490 Query: 495 ASTEMLTSQSKSLSTTVSVFRC 516 A+ + L Q+++L V++FR Sbjct: 491 AAAKSLEQQAQALMQEVAIFRV 512 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 198 bits (503), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 188/297 (63%) Query: 220 PLRKSINELHLISSGELEGQNEHKAAGDLGLLENALTLMRKSLISMIEEIRSGISSMSIA 279 PL++++ ++ G+L + + G L AL M +SL ++ E+R G +++ A Sbjct: 218 PLKEAVQIAQRVARGDLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTA 277 Query: 280 SGELSMGNLDLSRRTESQAASTAEITSGLGELIHMVAETANIARNAEKCASEAQNISEEG 339 S E++ GNLDLS RTE QA S E S + EL V + A+ AR A + A+ A +I+ +G Sbjct: 278 SHEIARGNLDLSNRTEQQAGSLEETASAMEELTSTVTQNADNARQANQLAATASDIASQG 337 Query: 340 IQAVSAAVKCMAEIVESSRQMNSVVSTIESIAAQTNLLALNAAVEAARAGQHGRGFAVVA 399 + V V+ M I ESSR++ ++S I+ IA QTN+LALNAAVEAARAG+ GRGFAVVA Sbjct: 338 GEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 397 Query: 400 KEVRLLATRSVEATENIKDLIKNSMQRTNAGQVKVSAAASAIDQLSKAISTVDTMMVKVA 459 EVR LA RS A + IK+LI +S+Q+ +AG V A S + ++ ++ V ++ +++ Sbjct: 398 SEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEIS 457 Query: 460 SGTKEQNTALDKIHHALEDIDQTTQQNAALVEQIYASTEMLTSQSKSLSTTVSVFRC 516 + T+EQ+ +++++ A+ +D+TTQQNAALVEQ A+ + L Q+ +L+ V F+ Sbjct: 458 AATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,169,707 Number of extensions: 40600 Number of successful extensions: 415 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 72 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)