BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0067.p
         (434 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...    91   2e-19

>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 191/413 (46%), Gaps = 23/413 (5%)

Query: 18  TRAIHRGWWMVAISFLGLAFGQTSLAFLTLGVFMKPFNQEFGWTRGQVAIALSVGAFVLL 77
           T   H  W +V + FL L       A  T  V + P  QEFGW R  +++ +SV   +  
Sbjct: 13  TPRFHYAWVVVGVIFLVLLCSAGIRA--TPSVMILPLEQEFGWNRSTISVVISVNIALYG 70

Query: 78  FTTPVVGRIIDRVGARKILLPSMAAF--GVSMCSMYFLTGSLIHFYFMFAVVGVVGAAAN 135
              P     + R G R+++L ++     G ++ ++  +   ++  + +    G  G AAN
Sbjct: 71  LIGPFSAAAMQRFGIRRVVLAALVLLASGTALSTLMHMPWHMLLSWGLLVGAGT-GVAAN 129

Query: 136 NVSYVRILSAWFVRHRGLSIGIASSGVAAGQSFGITLAQNVITDQGWRMAYVALGASVLL 195
            +    I+S WF   RGL++G+ ++  A GQ   + L   ++   GWR +   L ++V L
Sbjct: 130 TLG-ATIVSRWFETRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWR-SVAFLVSAVAL 187

Query: 196 VGLPIVALFIKNDPKDVGLEPCG-ADDVAGEKISLGYYVSKA-----EALRMPVFWALIF 249
           + +P+V L +   P  +G +  G   ++  E +S    +  A      ++RMP FW L+F
Sbjct: 188 LAIPLVWLLLPESPAAIGQKMLGQTSEIKDEGLSRRNPLFIALDALRTSVRMPDFW-LLF 246

Query: 250 LAFFMA-TALHG-IQIHFVPLLLDAGLSPGQVTGLLVSVLSVGAIVGRVGTGFLFDRFFA 307
            +FF+   + +G I   F+ +  D G++      +L + + +  +VG   +G+L DR+  
Sbjct: 247 ASFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASIL-AAMGMLDLVGTTLSGWLSDRYNP 305

Query: 308 PYVAIGVFGLPIIGLLLVLNHVGL--WGLCAGAFFFGIGLGSESDVLGYFTSRYFGLKSM 365
             +    +GL  + L+ +    GL  +GL   A F+G+   +         +  FG  + 
Sbjct: 306 RVLLFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLANDVFGRLAA 365

Query: 366 AELYGYIFGAFMAGSSAGPALYGIVQGKTGNYDTTLFASIGMLMFVCLVCAFL 418
             ++G+I      G++    L G ++   GNY     +SI ++   CLV A L
Sbjct: 366 PIVFGWIVAGHQLGAATATTLAGYLRASLGNYT---LSSI-LMGVACLVGAVL 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.144    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,327,060
Number of extensions: 56972
Number of successful extensions: 332
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 5
Length of query: 434
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,203,190
Effective search space: 416303740
Effective search space used: 416303740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)