BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0061.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312207|ref|YP_003776299.1| FAD-dependent pyridine nucleoti...   128   1e-30
gi|300312205|ref|YP_003776297.1| nitrite reductase large subunit...    70   3e-13

>gi|300312207|ref|YP_003776299.1| FAD-dependent pyridine
           nucleotide-disulfide oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 413

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/305 (33%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 12  RP-VVIVGSGLAAVSALEGM-REAGYSGPVVMVGEERQMPYDRPPLSKMVLSEIGAEDKI 69
           RP +V+VG+G+A +  +E + + A     + + G E    Y+R  LS  VL+   + D I
Sbjct: 11  RPSLVVVGNGMAGMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSP-VLAGDKSIDDI 69

Query: 70  FLRDQSAYDALGATMLLGRSVIKIEAGNREVSLDDGTRLPYEKLLLATGSRPRILQGLSP 129
            L  ++ YD  G T+  G  V+ I+   R V    G  + Y++LLLATGS P I+     
Sbjct: 70  MLNPRAWYDDNGITLHAGDPVVHIDRRQRTVHAKSGLTVQYDRLLLATGSTPFIIPVPGH 129

Query: 130 SDPGVFYLRTLDDSIALRAALKDASSLVVIGGGVIGLEVAAVAVKAGVSTTVIEAGNRLM 189
             PGV   R + D  A+  A +     VVIGGG++GLE A   ++ G+  TV+   + LM
Sbjct: 130 QLPGVIAFRDIQDVDAMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMDVTVVHVTDALM 189

Query: 190 ARAATPQLSALLEKVHRQNGVNVLCGASPTGFAFFNNLHAISMADGTVLEADLLVVGIGV 249
            +      +ALL+K     G+  L  A        + + A+   DG+ + ADL+V+  GV
Sbjct: 190 NQQLDKPAAALLKKALEDKGLRFLLNAHTEEIVGPDRVTAVRFKDGSSIPADLVVMTAGV 249

Query: 250 VPETSLASAAGIECGPAGIVVDGMGATNVEHIYAAGEVAHHFNAGSGGHERQENWHHAAA 309
            P  +LA AAG+ C  A I+VD    T    +YA GE   H  A  G       W  A  
Sbjct: 250 RPNIALAKAAGLHCERA-IIVDDTLQTYDPRVYAVGECVQHRKATFG--LVAPIWDQARV 306

Query: 310 HGKHV 314
            G H+
Sbjct: 307 CGAHL 311


>gi|300312205|ref|YP_003776297.1| nitrite reductase large subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 134/295 (45%), Gaps = 32/295 (10%)

Query: 14  VVIVGSGLAAVSALEGMREAGYSG-PVVMVGEERQMPYDRPPLSKMVLSEIGAED----- 67
           ++++G G+     LE + E+G     V ++ EE +  YDR  LS+    +  AED     
Sbjct: 3   IIVIGHGMVGHKFLECLAESGAGDLQVTILCEEPRPAYDRVHLSEFFAGKT-AEDLSLVA 61

Query: 68  -KIFLRDQSAYDALGATMLLGRSVIKIEAGNREVSLDDG---TRLPYEKLLLATGSRPRI 123
              F R +S   A+   + L     +I+   ++V ++       + Y+KL+LATGS P +
Sbjct: 62  PGFFDRGRS---AVQFDLKLNAKAQQIDLERKQVLVNVAGVEETMSYDKLVLATGSYPFV 118

Query: 124 LQGLSPSDPGVFYLRTLDDSIALRAALKDASSLVVIGGGVIGLEVAAVAVKAGVSTTVIE 183
                      F  RT++D  A+      +   VVIGGG++GLE A       + T V+E
Sbjct: 119 PTVAGNQRKDCFVYRTIEDLEAMLECGSRSKIGVVIGGGLLGLECAKALRDLKLETHVVE 178

Query: 184 AGNRLMA--------RAATPQLSALLEKVHRQ-NGVNVLCGASPTGFAFFNNLHAISMAD 234
              RLMA        R    ++  L    H Q N V ++ G   T        H ++  D
Sbjct: 179 FAPRLMAVQVDESGGRVLRQKIEELGVTAHTQKNTVEIVDGKHHT--------HRMNFED 230

Query: 235 GTVLEADLLVVGIGVVPETSLASAAGIECGP-AGIVVDGMGATNVEHIYAAGEVA 288
           G+ LE D++V   G+ P   LA  AG++ G   GI +D    T+   +YA GE A
Sbjct: 231 GSHLETDMIVFSAGIRPRDELARQAGLKVGDRGGIAIDNSCLTSDPAVYAIGECA 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,249,893
Number of extensions: 54663
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 4
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)