BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0058.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone hydr...    64   2e-11
gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone hydro...    60   1e-10
gi|300311050|ref|YP_003775142.1| esterase_lipase superfamily pro...    55   8e-09

>gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 25/224 (11%)

Query: 22  YVEVDGIRTHYIEVGTGPLLVLVHGGGAGADSWGNWKSCLPAYAKNFRVIAPDMPGFGRT 81
           +  V+ IR HY   G   L VLV     G  S   W   +P + ++FRV+  D  G G++
Sbjct: 3   FANVNAIRLHYQLEGDASLPVLVLSNSLGT-SLSMWDPQMPQWLQHFRVLRYDTRGHGQS 61

Query: 82  GKPDPSQYDYSQESRNRHLIALLEKLGAGPVNIIGNSMGGATALGIAIERPDLINKMVLM 141
            +  P +   +Q   +  +IALL+ LG    +  G SMGG+T + +A+  P  INK++L 
Sbjct: 62  -EVTPGECSIAQLGSD--VIALLDHLGIAQAHFCGLSMGGSTFMWLAVHHPQRINKLILC 118

Query: 142 GSAGLAIANPDPSYMQAFSSYDYT--REAMRVLMKALAGPRYVIDEELLNYRHE------ 193
            + G  I   +     A++S   T  RE +  +  A+   R++  E    +  +      
Sbjct: 119 NT-GAKIGTAE-----AWNSRIETVRREGLGAIAGAVVS-RWLTPEYAQAHPQQVQALTA 171

Query: 194 -LMQDPAA--QKAIDVIRRSKITYFKDVISSIKLPTLVVGGKED 234
            L+  PA     A   +R   +   ++ I+ I+ PTL++ G  D
Sbjct: 172 MLLATPAEGYAAACAAVRDHDL---REAIAGIRAPTLIIAGSGD 212


>gi|300313276|ref|YP_003777368.1| 3-oxoadipate enol-lactone
           hydrolase/4-carboxymuconolactone decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 97/245 (39%), Gaps = 42/245 (17%)

Query: 57  WKSCLPAYAKNFRVIAPDMPGFGRTGKPDP--SQYDYSQESRNRHLIALLEKLGAGPVNI 114
           W       A + RVIA D  G G + K D   S  D + ++       LL +L +GPV  
Sbjct: 90  WDGLANQLAADCRVIAYDHRGHGSSEKADGLYSMADLADDAAR-----LLRELDSGPVVW 144

Query: 115 IGNSMGGATALGIAIERPDLINKMVLMGSAGLAIANPDPSYMQAFSSYDYTREA--MRVL 172
           +G SMGG     +A+  P L+  +VL        AN   +Y       D  REA   R+ 
Sbjct: 145 VGLSMGGMVGQELALRHPGLVRALVL--------ANTTSAYP------DAAREAWQQRIA 190

Query: 173 MKALAGPRYVIDEELLNYRHELMQDPAAQKAIDVIRRSKITYFKDV-------------- 218
                G   + D  +  Y HE  +  +AQ A     R ++     V              
Sbjct: 191 TVRAEGIEVIADAVMGRYFHEGFR--SAQAATVARYRQRLVTTDAVGYVGCCHAVGTVDT 248

Query: 219 ---ISSIKLPTLVVGGKEDQVAILARTYGYLELIENSWGFVLPHVGHWAMMEAPKEFVSI 275
              + SI++PTLV+ G+ DQ   +A     ++ I  +   V+    H + +E P  F  +
Sbjct: 249 AARLGSIRVPTLVIAGELDQGTPVAMAQALVDGISGARLAVIAGASHVSAVEQPALFAEL 308

Query: 276 TTAFF 280
              F 
Sbjct: 309 VCGFI 313


>gi|300311050|ref|YP_003775142.1| esterase_lipase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score = 54.7 bits (130), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 2/115 (1%)

Query: 26  DGIRTHYIEVGTGPLLVLVHGGGAGADSWGNWKSCLPAYAKNFRVIAPDMPGFGRTGKPD 85
           D  + HY   G GP L+L HG  +  ++W  +        +++RVI+ D  G G++ KP 
Sbjct: 7   DQRKIHYQVEGEGPPLLLHHGFTSSLEAW-RFFGFTDVLRQHYRVISFDALGHGQSDKPH 65

Query: 86  PSQYDYSQESRNRHLIALLEKLGAGPVNIIGNSMGGATALGIAIERPDLINKMVL 140
            S   YSQ  R R  +A+L+       +  G S+GG    G+  + P+ +  ++L
Sbjct: 66  DSAA-YSQHQRCRDALAVLDAAQVERTHFFGYSLGGWVGYGLVRQAPERLRSLIL 119


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 897,283
Number of extensions: 35919
Number of successful extensions: 141
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 3
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)