BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0057.p
         (388 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygena...    73   4e-14

>gi|300313279|ref|YP_003777371.1| vanillate O-demethylase oxygenase
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 30  RNHWYPIKLSREIGESQVVKATVCGENILLKR-IDGKVFAIRDRCIHRGVPLSEKLECYS 88
           +N WY      EI +S+ +   +CGE I+  R   GKV A+ D C HRG PLS  L    
Sbjct: 4   KNAWYVACTPDEI-DSKPLGRQICGEKIVFYRGAGGKVAAVEDFCPHRGAPLS--LGFVR 60

Query: 89  KGTITCWYHGFTYKWENGELCDILASPDSRAIGRRSIKTYPVEEAKGVVFVFVGDIDTTP 148
           +G + C YHG     E G     ++ P  R  G   I++YPVEE  G ++V+ GD +   
Sbjct: 61  EGQLVCGYHGL----EMGCDGKAISMPGQRVRGFPCIRSYPVEERYGFIWVWPGDKEQA- 115

Query: 149 HPLSEDVPPMFLDADMALEGDSYMVDSNWRVGCENGFDGLH-VYIHRTS 196
            P          + + A  G  Y ++ ++R+  +N  D  H  Y+H +S
Sbjct: 116 DPAQIHHLEWADNPEWAYGGGLYHINCDYRLMIDNLMDLTHETYVHASS 164


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,278,727
Number of extensions: 52880
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,207,925
Effective search space: 363585425
Effective search space used: 363585425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)