BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0055.p
         (353 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312143|ref|YP_003776235.1| homocitrate synthase [Herbaspir...    64   2e-11

>gi|300312143|ref|YP_003776235.1| homocitrate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 32/250 (12%)

Query: 9   LYIQDVTLRDGMHAIGHSYTVEQVRKIASALDAAGVAAIEVAHGDGLAGSSFNYGFGKHS 68
           + I D TLRDG    G ++T E+   IA ALD  GV  +E+  G  + G          +
Sbjct: 2   VTINDTTLRDGEQTAGVAFTAEEKIDIARALDEIGVPEMEI--GIPIMG---------QA 50

Query: 69  DREWISAVADVVTKARLTTLLIPGIGTLHDLKDAAAAGVSSVRVATHCTEADIA------ 122
           + E I A+A +  +++    ++ G     DL  AA      V ++   ++  I       
Sbjct: 51  EIEVIQAIAALPLRSKT---MVWGRMCEADLAAAARCNADIVNLSMPVSDIHIQHKLQRD 107

Query: 123 --------RQHIGAARDLGLDTVGFLMMSHMISPEQLAEQAKLMESYGAECVYVVDSGGA 174
                   R  +  A DLG++     +     S   L    +++E+  A           
Sbjct: 108 RDWVLAQIRHFLPKALDLGMEVC---LGGEDSSRADLDFMLRVIETAQAAGARRFRFADT 164

Query: 175 LGMSDVTARFQAF-DLVLKPETQRGIHAHHNLSLGVANSIVAVEAGATRVDASLAGMGAG 233
           LG+ D  A ++    L  + + +  +HAH++L L  AN++ A+ AGA+ V+ ++ G+G  
Sbjct: 165 LGLLDPFATYEVIRQLRQEVDIELEMHAHNDLGLATANTLAAINAGASHVNTTVNGLGER 224

Query: 234 AGNAPLEVFV 243
           AGNAPLE  V
Sbjct: 225 AGNAPLEEVV 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,061,251
Number of extensions: 43838
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,212,660
Effective search space: 323780220
Effective search space used: 323780220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)