BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0051.p (512 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylas... 388 e-109 gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum... 375 e-105 gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin sub... 373 e-104 gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspiril... 361 e-101 >gi|300313973|ref|YP_003778065.1| acetyl/propionyl-CoA carboxylase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 671 Score = 388 bits (996), Expect = e-109, Method: Compositional matrix adjust. Identities = 223/485 (45%), Positives = 306/485 (63%), Gaps = 21/485 (4%) Query: 42 IVKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSY 101 + +IL+ANRGEIACR+ A+ LGI T+AVYSDADA + H D +VR+G APA +SY Sbjct: 1 MFTKILIANRGEIACRVAATARRLGIATVAVYSDADARAKHVAACDESVRLGPAPARESY 60 Query: 102 LNVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRAR 161 L + ++ A L GAQ +HPGYGFLSEN FA+A + G+ +IGP IE MG K A+ Sbjct: 61 LCAEKIIAAALATGAQAIHPGYGFLSENAGFAQACAQAGLVFIGPPASAIEAMGSKAAAK 120 Query: 162 SIAESCGVPVLPGSRAFLPGESVE--LIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSA 219 ++ E VP++PG GE E L+ +A R+G+P+L+KA+ GGGG GM++V+ Sbjct: 121 ALMEQAAVPLVPGYH----GEEQESGLLHSQADRIGYPVLLKASAGGGGKGMRVVERSED 176 Query: 220 LVAAVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQ 279 AA+AS + +A+ +F D V +E+Y+ R RHIE+QVF G G V+LFER+CSVQRR Q Sbjct: 177 FDAALASCKREAIASFGDDRVLVEKYLTRPRHIEIQVFADGHGHCVYLFERDCSVQRRHQ 236 Query: 280 KIIEESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQV 339 K++EE+PAP + + M AAV+ + Y GAGTVEFI + F+F+EMNTR+QV Sbjct: 237 KVLEEAPAPGMSEERRAAMGEAAVAAARAVGYVGAGTVEFIAN-QDGSFYFMEMNTRLQV 295 Query: 340 EHGVTEATTGWDLVQSQILLAAGQLQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPL 399 EH VTE TG DLV+ Q+ +AAGQ P+ Q + G A+E R+YAENP+K FLP+ G L Sbjct: 296 EHPVTEMITGLDLVEWQLRVAAGQALPLKQEQLRIHGHAIEARIYAENPEKGFLPAIGTL 355 Query: 400 ERYAFPAALD------------GLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALER 447 R AA++ +R+D GVR+GD+I+PFYDPMIAK+I G +R AL Sbjct: 356 TRMRSAAAVEFRLGQSAPGDPAHVRIDAGVREGDAISPFYDPMIAKLIVWGPDRDAALRN 415 Query: 448 MQEVLRMTEITGIRHNIDFLLQVLQHPQFVAGMVDTHFVERERQMLLSAPAPTPASGAPL 507 MQ L ++ G+ NI FL +++ F +DT +ER R L P P+ L Sbjct: 416 MQRALAQYQVVGLATNIAFLQRLVAGQAFSTAALDTGLIERHRDTLF--PPPSSPDTETL 473 Query: 508 ARTVA 512 A +A Sbjct: 474 ALAIA 478 >gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1] Length = 1207 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 211/451 (46%), Positives = 288/451 (63%), Gaps = 8/451 (1%) Query: 42 IVKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSY 101 + +L+ANRG IACRI+R + L + + VYS+AD SLH AD + +G PAAQ+Y Sbjct: 1 MFDHLLIANRGAIACRILRTLRTLDVTGVCVYSEADLGSLHVLQADRAISLGEGPAAQTY 60 Query: 102 LNVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRAR 161 L VD +L A GAQ +HPGYGFLSEN AFA A E GIA++GPTP + G KH AR Sbjct: 61 LAVDKILAAARDSGAQAIHPGYGFLSENAAFAEACEAAGIAFVGPTPAQLRIFGLKHTAR 120 Query: 162 SIAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALV 221 ++A GVP+L G+ ES++ + A+RVG+P+++K+ GGGGIGM++ + L Sbjct: 121 ALAREQGVPMLEGTDLL---ESIDDALAAASRVGYPVMLKSTAGGGGIGMRVCRSDAELA 177 Query: 222 AAVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKI 281 A S + F+DA V++E+Y+ RARH+EVQVFG G G V+ L R+CSVQRR QK+ Sbjct: 178 DAFDSVRRLGQNNFSDAGVFIEKYIERARHLEVQVFGDGRGEVIALGVRDCSVQRRNQKV 237 Query: 282 IEESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEH 341 +EE+PAPNLP + E + AAA+ L+ YR AGTVEF+ D+ +F+FLE+NTR+QVEH Sbjct: 238 LEETPAPNLPDGMAEALCAAAIKLAKAVNYRSAGTVEFVYDSLAGQFYFLEVNTRLQVEH 297 Query: 342 GVTEATTGWDLVQSQILLAAGQLQPISQSA--ISRTGAAVECRVYAENPQKNFLPSPGPL 399 GVTE G DLV+ I LAAG L P++Q A + G A++ R+YAE+P + F P PG L Sbjct: 298 GVTEQVWGVDLVRWMIELAAGDLPPLAQLAAGLQPRGHAIQARLYAEDPGRQFQPCPGLL 357 Query: 400 ERYAFPAALDG--LRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEI 457 FP +DG LR+DT V G I P++DPMIAK+I+ R A + LR T + Sbjct: 358 TAVDFP-PVDGQALRIDTWVEAGCEIAPYFDPMIAKLISWQPTREAARLALDAALRATLL 416 Query: 458 TGIRHNIDFLLQVLQHPQFVAGMVDTHFVER 488 G+ N +L Q+L F +G T +E+ Sbjct: 417 YGVETNQHYLRQILADVPFASGQPWTRCLEQ 447 >gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae SmR1] Length = 462 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 211/451 (46%), Positives = 291/451 (64%), Gaps = 9/451 (1%) Query: 43 VKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSYL 102 ++++L+ANRGEIA RIIRAA+ LGI T+A SDAD DSL MAD RIG A A +SYL Sbjct: 5 LRKLLIANRGEIAVRIIRAAQALGITTVAACSDADTDSLAARMADEVQRIGPARADRSYL 64 Query: 103 NVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRARS 162 NVDA+L+A GA +HPGYGFLSEN AFA A G+ ++GP +TI MGDK AR Sbjct: 65 NVDALLKAARDSGADALHPGYGFLSENAAFAEAVNAAGLIFVGPQADTIRRMGDKAEARR 124 Query: 163 IAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALVA 222 A + GVPV+PGS L E + + A +G+PLL+KA+ GGGG G+++ D + L Sbjct: 125 TAAAAGVPVVPGSAGEL--EDLATALACADEIGYPLLIKASAGGGGRGIRMARDATELAR 182 Query: 223 AVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKII 282 Q++A F A+VYLER++ RARHIEVQ+ G G+ VHLFERECS+QRR QK++ Sbjct: 183 EFPLAQAEAQAAFGSAAVYLERFIRRARHIEVQILGDGE-RAVHLFERECSLQRRRQKVL 241 Query: 283 EESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEHG 342 EE+P+P L + + +AV L+ YRGAGT+E++ D + EFFF+EMNTRIQVEH Sbjct: 242 EEAPSPALTPAQRQALCDSAVRLAERLHYRGAGTLEYLFDDESGEFFFIEMNTRIQVEHP 301 Query: 343 VTEATTGWDLVQSQILLAAGQLQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLERY 402 VTE TG DLVQ+ + +A G+ + QS I GAA+E R+ AE+P++NF P PG + Sbjct: 302 VTEMITGIDLVQAMLRIAGGEPLGLQQSDIRMQGAALEMRINAEDPERNFFPCPGTVAEL 361 Query: 403 AFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIRH 462 +P +G+RV++ + G I P+YD ++AK++ G +R+ A+ R Q + T ITG+ Sbjct: 362 QWPQG-EGIRVESHLYAGYRIPPYYDSLLAKLVVHGKDRAQAIARAQAAVLATRITGMAT 420 Query: 463 NIDFLLQVL-----QHPQFVAGMVDTHFVER 488 + +L Q +F G ++T ER Sbjct: 421 TLSLHQWLLADARVQSARFDTGALETWLAER 451 >gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 281/448 (62%), Gaps = 5/448 (1%) Query: 42 IVKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSY 101 + ++IL+ANRGEIA RI RA + LGI+T+ V+S+AD ++ + ++AD +V IG AP+ SY Sbjct: 1 MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADREAKYVKLADESVCIGPAPSTLSY 60 Query: 102 LNVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRAR 161 LN+ A++ A AQ +HPGYGFLSEN FA EK+G +IGP E I MGDK A+ Sbjct: 61 LNMPAIISAAEVTDAQAIHPGYGFLSENADFAERVEKSGFVFIGPRAENIRMMGDKVSAK 120 Query: 162 SIAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALV 221 GVP +PGS LP E IVQ A ++G+P+++KAAGGGGG GM++V +AL+ Sbjct: 121 QAMIRAGVPCVPGSDGALPDNPKE-IVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALI 179 Query: 222 AAVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKI 281 AV T+++A F + VY+E+Y+ RH+E+Q+ + L ER+CS+QRR QK+ Sbjct: 180 NAVTMTKTEAGAAFGNPEVYMEKYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKV 239 Query: 282 IEESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEH 341 IEE+PAP +P +++EK+ YRGAGT EF+ + +EF+F+EMNTR+QVEH Sbjct: 240 IEEAPAPGIPRKIIEKIGERCAEACRKMNYRGAGTFEFLYE--NEEFYFIEMNTRVQVEH 297 Query: 342 GVTEATTGWDLVQSQILLAAGQLQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLER 401 VTE TG D+VQ QI +AAG+ Q I G A+ECR+ AE+P K F+PSPG + Sbjct: 298 PVTEMITGVDIVQEQIRIAAGEKLRYRQRDIELKGHAIECRINAEDPFK-FIPSPGRITA 356 Query: 402 YAFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIR 461 + P G+RVD+ G + P YD M+ K+I G R A+ RMQ L + GI Sbjct: 357 WHVPGG-PGIRVDSHAYSGYFVPPNYDSMVGKVIAYGATREQAIRRMQIALSEMVVEGIS 415 Query: 462 HNIDFLLQVLQHPQFVAGMVDTHFVERE 489 NI +++ +F G + H++E + Sbjct: 416 TNIPLHRELMVDARFFEGGTNIHYLEHK 443 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,511,688 Number of extensions: 63093 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 5 Length of query: 512 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 423 Effective length of database: 1,198,455 Effective search space: 506946465 Effective search space used: 506946465 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)