BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0050.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...   142   2e-35
gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...    65   6e-12

>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  142 bits (359), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 83/125 (66%)

Query: 107 RVVNIPVCYGGEHGPDLDSVARTCGLEISKLIELHSTAQVSVQMVGFAPGHPYIGTFDQR 166
           R V IPV YGG  GPDLD+VAR  GL   ++I  HS A+  V  +GF PG  Y+G  D  
Sbjct: 85  RTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHSNAEYVVYFLGFLPGFAYMGGLDAS 144

Query: 167 LSPPRREQPRTTVPAGSIGLANRQTVIYPFELPGGWNLIGRTPLKLFDPVRQPSCLLQAG 226
           L+ PR   PR ++PAGS+G+   QT +YP   PGGW LIGRT L+LFDP ++P  LL+ G
Sbjct: 145 LATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGWQLIGRTTLQLFDPSQEPPTLLRPG 204

Query: 227 DRIRF 231
           DR+RF
Sbjct: 205 DRVRF 209


>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 35/222 (15%)

Query: 39  AAAAANQLRTAKIPGVIEVVPAMRTVGVHYQPARLRPLSYASEIPYQTLLRLVNAQMQEF 98
           A A    +    +PGV++V  A  +  + + P  + PL+   +         + A     
Sbjct: 38  AMAITRAVEKLALPGVLDVCLANASFQIRFNPDLIHPLALLEQ---------LEALESST 88

Query: 99  RMDGRMDFRVVNIPVCYGG------------EH----GPDLDSVARTCGL-EISKLIELH 141
             + R+D R++ +PV Y               H      DL   AR  G  E    I  H
Sbjct: 89  TAERRIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQYAARINGYDETQAFIAAH 148

Query: 142 STAQVSVQMVGFAPGHPYIGTF---DQRLSPPRREQPRTTVPAGSIGLANRQTVIYPFEL 198
           S     V MVGF  G P++      D++L  P+  +PRT  P  ++G       IY    
Sbjct: 149 SGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPKLTLGHGGCFGCIYSVRG 208

Query: 199 PGGWNLIGRTPLKLFDP------VRQPSCLLQAGDRIRFIPI 234
            GG+ + G TP  ++DP      +R+     +AGD ++F PI
Sbjct: 209 AGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPI 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 867,542
Number of extensions: 36677
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)