BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0045.p (481 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 486 e-138 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 469 e-133 gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspi... 383 e-107 gi|300312843|ref|YP_003776935.1| response regulator containing a... 204 9e-54 gi|300310865|ref|YP_003774957.1| response regulator containing a... 184 1e-47 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/476 (51%), Positives = 328/476 (68%), Gaps = 4/476 (0%) Query: 3 MVFGLFGWMLYKSHEEASQYAVETSQNITLMAQRDIVRNIEILSLSLDALANRYQDPL-F 61 MV + LY+S+++ Q AV + N+TL++QR I RN+E+LSLSLD LA R+Q PL Sbjct: 39 MVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEMLSLSLDTLAYRFQHPLSA 98 Query: 62 RQLTHNQQYSYLFGSVAAAKHVMVMAVLDAAGKVAVSSL--PGTPANTYGDRLYFTVQRD 119 R+L Q+Y+YLFGS H+ VMAVLDA G+V VSS G A Y DR YF RD Sbjct: 99 RRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRGNGAPHYADRAYFIAHRD 158 Query: 120 RPETGLYISPPITAKFDRELQVVVLSKRLSNQDGSFAGVVVMALDLSYFRELFSGIALGE 179 P GLY+S P+ A ELQVVVLSKRLSN+DGSFAGVVVMALDL+YFRELF G+ALG+ Sbjct: 159 SPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYFRELFEGLALGD 218 Query: 180 DGVMSLYARSGVVYMRLPYAASMIGRDISSSDNFLRIKSLIQQESGSFFARAVTDGVKRL 239 +G++SLY+ G+ YMR+PY ++IGRDIS + NF R+++++ +E GSFFA A DGV+RL Sbjct: 219 EGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFFAHATNDGVRRL 278 Query: 240 YAFRNVPGTQLVVFVGRSEKHIFSHWTESLYALGGAMLVFTVVCMALFYILRNELKKRRR 299 Y FR +PG+ L+VFVG +E+ IF W ++ YA+ ++ +F ++ L +R EL++R Sbjct: 279 YTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLLTAWLLLHVRQELRRRVT 338 Query: 300 AEDRLQELVSVDDLTKLLNRRALDNALGDLWSRSRRSRGI-FSILFIDVDYFKFYNDTYG 358 AE +L+ L D LT LLNRRALD AL W R +R+ G FS+LFIDVDYFK YNDTYG Sbjct: 339 AERQLEALARTDGLTDLLNRRALDEALQATWERCQRNLGASFSVLFIDVDYFKAYNDTYG 398 Query: 359 HQKGDDVLVSVSRAISTQLPRSSDLAARYGGEEFIVVLAETDADGALHVGEKIRDAIEAL 418 H+ GD VL V+ ++ +LPR +D A RYGGEEF+V+L +TD GA + +++ DA+ Sbjct: 399 HKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMAQRLCDAVRER 458 Query: 419 NIPHAKSQIGHISASIGAAMYDSTVHDSINAVLNAADGALYAAKGNGRNNVQISAK 474 +I H S + ++ S+G A + H + VLNAAD ALY AK GR+ V +S++ Sbjct: 459 HIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAALYRAKQAGRDRVHLSSQ 514 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust. Identities = 245/480 (51%), Positives = 326/480 (67%), Gaps = 11/480 (2%) Query: 1 MAMVFGLFGWMLYKSHEEASQYAVETSQNITLMAQRDIVRNIEILSLSLDALANRYQDPL 60 + MV + G LY+ + + A+ + N+TL+ QR I RN+EILSL++D LA RYQ PL Sbjct: 16 IMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAYRYQHPL 75 Query: 61 FRQLTH---NQQYSYLFGSVAAAKHVMVMAVLDAAGKVAVSSL----PGTPANTYGDRLY 113 LTH ++Y+YLFGS AAA H+ +A+LDA G V V+S P N Y +R Y Sbjct: 76 --DLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVN-YSERTY 132 Query: 114 FTVQRDRPETGLYISPPITAKFDRELQVVVLSKRLSNQDGSFAGVVVMALDLSYFRELFS 173 FTV RD + GL+IS PI A EL VVVLSKRLS +DGSF GVV+MALD+SYFR+LF+ Sbjct: 133 FTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDLFT 192 Query: 174 GIALGEDGVMSLYARSGVVYMRLPYAASMIGRDISSSDNFLRIKSLIQQESGSFFARAVT 233 G+ LGEDG+MSLY+ GV YMR+PY S IGR+I+++ NF R+++++ G+FFARA T Sbjct: 193 GLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARAHT 252 Query: 234 DGVKRLYAFRNVPGTQLVVFVGRSEKHIFSHWTESLYALGGAMLVFTVVCMALFYILRNE 293 DGV+RLY FR +P L+V +GRSE+ IF W ++LY++ +++FT + L ++R E Sbjct: 253 DGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTALAGVLLMLVRRE 312 Query: 294 LKKRRRAEDRLQELVSVDDLTKLLNRRALDNALGDLWSRSRRSRGI-FSILFIDVDYFKF 352 L KR AE +L++L D LT LLNRR+LD AL +W RS+RS FS LFIDVDYFK Sbjct: 313 LLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDVDYFKR 372 Query: 353 YNDTYGHQKGDDVLVSVSRAISTQLPRSSDLAARYGGEEFIVVLAETDADGALHVGEKIR 412 YNDTYGH+ GD VL +V+ + L R +DLA RYGGEEF+V+L +TD GAL + +++ Sbjct: 373 YNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRMAQQLC 432 Query: 413 DAIEALNIPHAKSQIGHISASIGAAMYDSTVHDSINAVLNAADGALYAAKGNGRNNVQIS 472 +AI IPH+ S +G IS SIG A + H + VLNAAD ALY AK GRN V ++ Sbjct: 433 EAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYIAKREGRNRVCVA 492 >gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/468 (44%), Positives = 285/468 (60%), Gaps = 14/468 (2%) Query: 11 MLYKSHEEASQYAVETSQNITLMAQRDIVRNIEILSLSLDALANRYQDPLFRQLTHNQQY 70 +LY+SH + + A+E NI +AQR I RN+E+L+L+LD+L RY+ ++ Q+ Sbjct: 9 VLYQSHRQVERAAIEHGANIARIAQRSISRNVELLTLALDSLTWRYRHTQLHEMPLQQKM 68 Query: 71 SYLFGSVAAAKHVMVMAVLDAAGKVAVSS------LPGTPANTYGDRLYFTVQRD---RP 121 +L G A++V + ++D G++ V S LPG Y +FT + + Sbjct: 69 EFLLGENIEARYVAALGIVDTDGELVVGSAALSQILPGP----YAQSDFFTAHQTHHAQG 124 Query: 122 ETGLYISPPITAKFDRELQVVVLSKRLSNQDGSFAGVVVMALDLSYFRELFSGIALGEDG 181 +TGLYIS P+T + +R +QVVVLSKRL+ DGSFAG+ +M L L YFR+LF G+ L DG Sbjct: 125 DTGLYISAPLTVRLERRMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGLTLENDG 184 Query: 182 VMSLYARSGVVYMRLPYAASMIGRDISSSDNFLRIKSLIQQESGSFFARAVTDGVKRLYA 241 V+SLY+ G+ YMR+PY + IG ++ S++ RI S GS+FARA DG + LY Sbjct: 185 VISLYSADGLAYMRIPYNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDGPRWLYT 244 Query: 242 FRNVPGTQLVVFVGRSEKHIFSHWTESLYALGGAMLVFTVVCMALFYILRNELKKRRRAE 301 F VPGT VF+GR+ IF W LYA+ M F + + L +R EL++R + Sbjct: 245 FARVPGTGWTVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQRRSALD 304 Query: 302 DRLQELVSVDDLTKLLNRRALDNALGDLWSRSRRSR-GIFSILFIDVDYFKFYNDTYGHQ 360 +L+EL D LT LLNRRALD AL W R+ + IFS+LF+DVD+FK YNDTYGH+ Sbjct: 305 QQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDTYGHK 364 Query: 361 KGDDVLVSVSRAISTQLPRSSDLAARYGGEEFIVVLAETDADGALHVGEKIRDAIEALNI 420 GD L++VSR I + R SD + RYGGEEF+V+L TD GA HV ++I AI++L I Sbjct: 365 AGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQSLKI 424 Query: 421 PHAKSQIGHISASIGAAMYDSTVHDSINAVLNAADGALYAAKGNGRNN 468 PH +S ++ SIG H SI V+ AD ALY AK +GRN Sbjct: 425 PHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 204 bits (520), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 139/404 (34%), Positives = 216/404 (53%), Gaps = 22/404 (5%) Query: 88 VLDAAGK--VAVSSLPGTPANTYGDRLYFTVQRDRPETGLYISPPITAKFDRELQVVVLS 145 V D GK + S+ P PAN DR YF RD + G ++ + ++ ++ +S Sbjct: 115 VFDEHGKRLLTSSAPPLAPANN-SDRDYFIWHRDHDDVGPHVGKALLSRSTGRW-IIPMS 172 Query: 146 KRLSNQDGSFAGVVVMALDLSYFRELFSGIALGEDGVMSLYARSGVVYMRLPYAASMIGR 205 +RL++ DGSFAGV++ LD+++F +L+ + +G+ G ++L R G + R+P+ I R Sbjct: 173 RRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINR 232 Query: 206 DISSSDNFLRIKSLIQQESGSFFARAVTDGVKRLYAFRNVPGTQLVVFVGRSEKHIFSHW 265 D S FL + L G + D +R +++ V LV+ V + + + W Sbjct: 233 DFSQGRLFL--EGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADW 290 Query: 266 TESLYALGGAMLVFTVVCMALFYILRNELKKRRRAEDR--------------LQELVSVD 311 + + G A+L+ + + L +++ R RAEDR L+ L D Sbjct: 291 KQQTFVYGAAVLLLLAIIGVFGWRLVGQIELRLRAEDRALQAMGELQMANHRLEMLAHQD 350 Query: 312 DLTKLLNRRALDNALGDLWSRSRRSRGIFSILFIDVDYFKFYNDTYGHQKGDDVLVSVSR 371 LT L NRR LD L + R+ RS +++ IDVD+FK YND YGHQ GD+ L V+ Sbjct: 351 GLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAG 410 Query: 372 AISTQLPRSSDLAARYGGEEFIVVLAETDADGALHVGEKIRDAIEALNIPHAKSQIGHIS 431 + + R DLAARYGGEE ++L TDA+GA V EK+R I+AL +PH + +G ++ Sbjct: 411 VLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRGNPVGVVT 470 Query: 432 ASIGAAMYD--STVHDSINAVLNAADGALYAAKGNGRNNVQISA 473 S+G + + S+ A+L AAD ALY AK GRN V+++A Sbjct: 471 VSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAA 514 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 184 bits (468), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 142/483 (29%), Positives = 230/483 (47%), Gaps = 36/483 (7%) Query: 10 WMLYKSHEEASQYAVETSQNITLM----AQRDIVRNIEILSLSLDALANRYQDPLFRQLT 65 W +++ E A + + N+ L A++ I +L + L + + R T Sbjct: 43 WTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSASARIRT 102 Query: 66 HNQQYSYLFGSVAAAKHVMVMAVLDAAGKVAVSSL-----PGTPANTYGDRLYFTVQRDR 120 H+ ++ SVA+ + + V+D G+ SS G+P + + + DR Sbjct: 103 HD----FMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDR 158 Query: 121 PETGLYISPPITAKFDRELQVVVLSKRLSNQDGSFAGVVVMALDLSYFRELFSGIALGED 180 P G + +T + + + +S+R+++ DGSFAGV+V +DL+YF+ + +G Sbjct: 159 PFIGQPMRSHVTGQ-----RTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPH 213 Query: 181 GVMSLYARSGVVYMRLPYAASMIGRDISSSDNFLRIKSLIQQESGSFFARAVTDGVKRLY 240 GV+ G + +R P A M R + S+ K + Q GSF R+ DGV+R+ Sbjct: 214 GVILFGLTGGSLILRRPLLADMTDRSPAMSEALR--KHMEQARRGSFAMRSERDGVERIS 271 Query: 241 AFRNVPGTQLVVFVGRSEKHIFSHWTESLYALG-GAMLVFTVVCMA---LFYILRNELKK 296 F+ + V ++ I W+ ++ G G +L+ V+C L ++ + Sbjct: 272 CFQQGEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERA 331 Query: 297 RRRAEDRLQELVSV----------DDLTKLLNRRALDNALGDLWSRSRRSRGIFSILFID 346 +A QEL S+ D LT + NRR D AL +R R+ S++ ID Sbjct: 332 EAQAIAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRTGESLSLMMID 391 Query: 347 VDYFKFYNDTYGHQKGDDVLVSVSRAISTQLPRSSDLAARYGGEEFIVVLAETDADGALH 406 VD+FK +NDTYGH GD L V+ AIST R D+ ARYGGEEF V+L A Sbjct: 392 VDHFKQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQG 451 Query: 407 VGEKIRDAIEALNIPHAKSQIGHISASIGAAMYDSTVHDSINA--VLNAADGALYAAKGN 464 + ++ A+ L I H +S +G ++ S+G A S I ++++ADGALY AK Sbjct: 452 LAHRVVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEE 511 Query: 465 GRN 467 GR+ Sbjct: 512 GRD 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,305,651 Number of extensions: 48869 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 40 Length of query: 481 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 392 Effective length of database: 1,198,455 Effective search space: 469794360 Effective search space used: 469794360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)