BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0043.p
         (473 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family [...   822   0.0  

>gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family
           [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/470 (82%), Positives = 427/470 (90%)

Query: 1   MSRAQAIAQASAYFDDGRFMTALQKRVAIRTESQEAASRPILYDYLLQEIQPELEGLGFT 60
           MSRAQAIA   AYFDDGRFM  L++RVAIRTESQE ASRPILYDYL QEI P L+ LGFT
Sbjct: 1   MSRAQAIAGVEAYFDDGRFMETLKRRVAIRTESQEPASRPILYDYLHQEITPYLQALGFT 60

Query: 61  CEVIDNPLPGGTPFLLAERLEADAVFTLLTYGHGDVVRGYDNQWREGLNPWKIVVEGDRW 120
           CEV+DNPLP G+PFL+AER+EA+A FT+LTYGHGDVVRGYD QWR GL+PW+IVVEG+RW
Sbjct: 61  CEVVDNPLPEGSPFLIAERIEAEAAFTVLTYGHGDVVRGYDKQWRAGLSPWEIVVEGERW 120

Query: 121 YGRGIADNKAQHTINFAALAEVLKLRGGKLGYNVKVILEMGEEAGSPGLKEVAEKYAEKL 180
           YGRGIADNKAQHTINFAAL EV+K+RGG+LGYNVK+ILEMGEE GSPGL  V ++YAE+L
Sbjct: 121 YGRGIADNKAQHTINFAALEEVMKVRGGRLGYNVKLILEMGEETGSPGLNAVCQQYAERL 180

Query: 181 KSDLFIASDGPRVNAPTPTMFLGSRGGCNFDLRVNSRDGGHHSGNWGGLLRNPGVRLANA 240
           K+DLFIASDGPRVNAPTPTMFLGSRGGCNFDL+ + RDGGHHSGNWGGLLRNPGVRLANA
Sbjct: 181 KADLFIASDGPRVNAPTPTMFLGSRGGCNFDLKCHLRDGGHHSGNWGGLLRNPGVRLANA 240

Query: 241 IACLVDGKGRIRVPSLLPDALPQSVRNALRNVEVGGGPDDPEVDVDWGEPGLTPAERVFG 300
           IACLVD +G IRVP+LLP ALPQSVR AL  V++GGGP DPE+D DWGEP LTPAERVF 
Sbjct: 241 IACLVDERGAIRVPALLPSALPQSVRKALAKVKLGGGPTDPEIDTDWGEPDLTPAERVFA 300

Query: 301 WNTLEVLAFKTGNPEMPVNAIPGHASAHCQIRFVVGSDDKNFIANIRAYLDAHGYTDVEV 360
           WNTLEVLAFKTGNPE PVNAIPG ASAHCQIRFVVGSDD +FI +IRA+LD HGY D++V
Sbjct: 301 WNTLEVLAFKTGNPEAPVNAIPGQASAHCQIRFVVGSDDAHFIEHIRAHLDEHGYDDIDV 360

Query: 361 TLSGIQFTATRLNPDDEWVRWGLASMQETSGKQPTLLPNLGGSLPNDVFSDVLGLPTLWV 420
           +L+G+QF ATRL+PDDEWVRWGLASMQETSGK+PTLLPNLGGSLPNDVFS+ LGLPTLWV
Sbjct: 361 SLAGVQFAATRLDPDDEWVRWGLASMQETSGKEPTLLPNLGGSLPNDVFSETLGLPTLWV 420

Query: 421 PHSYPACSQHAPNEHILASVSRESLQVMAGLFWDLSEQGEQVLARRTMLA 470
           PHSYPACSQHAPNEHILASVSRESLQ+MAGLFWDL+EQG  VLARR  LA
Sbjct: 421 PHSYPACSQHAPNEHILASVSRESLQLMAGLFWDLAEQGAAVLARRQALA 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,580,738
Number of extensions: 70095
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,198,455
Effective search space: 460206720
Effective search space used: 460206720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)