BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0042.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 469 e-133 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 226 2e-60 gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 224 6e-60 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 187 1e-48 gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel A... 186 2e-48 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/268 (85%), Positives = 254/268 (94%) Query: 17 DIALELCALSKIYALKRGMFKTPGEIRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLL 76 DIALELCAL+K+Y LKRG+F+ PG+++AV+DVSLRLYRGETLGLVGESGCGKSTLAKMLL Sbjct: 13 DIALELCALTKVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLL 72 Query: 77 GLLEPTSGNVLINGQEVDPTLRKENARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRIG 136 GLL PTSGNVLINGQEVDPT RK +ARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLH IG Sbjct: 73 GLLPPTSGNVLINGQEVDPTERKAHARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHGIG 132 Query: 137 SSAEQQKSVRRILDLVGMPERTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSAL 196 ++AE+ + V+ ILDLVGMPERT+AQYPNQLSGGQRQRVAIARALIL+PDILICDEPTSAL Sbjct: 133 NAAERNRQVKDILDLVGMPERTHAQYPNQLSGGQRQRVAIARALILRPDILICDEPTSAL 192 Query: 197 DVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFSD 256 DVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVM++GSIVEL++RE++FS+ Sbjct: 193 DVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQGSIVELQSREQLFSE 252 Query: 257 AQHPYTRMLLASALTPEPGLGIPELAVS 284 QH YTRMLLASALTP+PG GIP LA + Sbjct: 253 PQHLYTRMLLASALTPDPGRGIPALAAA 280 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 226 bits (575), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 124/264 (46%), Positives = 170/264 (64%), Gaps = 6/264 (2%) Query: 20 LELCALSKIYALKRGMF-KTPGEIRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLLGL 78 L++ L+ + +K G+F + + AV VS LY GETL +VGESGCGKST + LL L Sbjct: 313 LKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRL 372 Query: 79 LEPTSGNVLINGQEVDPTLRKENA---RHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRI 135 ++ G V G+++ R E R IQ IFQDP++SL+PR TV + P+ +H + Sbjct: 373 VDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGM 432 Query: 136 GSSAEQQKSVRRILDLVGMPERTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSA 195 A Q+ V +L VG+ +YP++ SGGQRQR+ IARAL L P I+I DE SA Sbjct: 433 KEGA--QERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSA 490 Query: 196 LDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFS 255 LDVS+QAQI+NL+LDL+AE G++++FISHD+ VVE + RVAVM+ G IVE+ R IF Sbjct: 491 LDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFE 550 Query: 256 DAQHPYTRMLLASALTPEPGLGIP 279 + QHPYTR L+A+ +P L P Sbjct: 551 NPQHPYTRKLMAAVPVADPTLRQP 574 Score = 175 bits (444), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 18/244 (7%) Query: 42 IRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPTSGNVLI--------NGQEV 93 + AV D+S + +GETL +VGESG GKS + ++ L+E G + +GQ + Sbjct: 24 VDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSMQFLRRSGQRL 83 Query: 94 D------PTLRKENARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHR-IGSSAEQQKSVR 146 D T+R I IFQ+P +SLNP TV E + ++LH+ +G +A Q +++R Sbjct: 84 DLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGLGRAAAQAEALR 143 Query: 147 RILDLVGMPE--RTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSALDVSVQAQI 204 +L++V +PE R ++P+QLSGG RQRV IA AL +P +LI DEPT+ALDV++QAQI Sbjct: 144 -MLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTIQAQI 202 Query: 205 LNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFSDAQHPYTRM 264 L L+ L+ E + +FI+HD+GVV + DRV VM +G VE +F+ HPYT+ Sbjct: 203 LQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENAVNPLFAAPAHPYTQS 262 Query: 265 LLAS 268 LLA+ Sbjct: 263 LLAA 266 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 224 bits (571), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 158/238 (66%), Gaps = 4/238 (1%) Query: 33 RGMFKTPGEIRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPTSGNVLINGQE 92 RG + P A+ V L++ GE +GLVGESGCGKSTL ++ GLL+P+ G VL+NG++ Sbjct: 33 RGWSRPPAITHALDKVDLKVLPGEVVGLVGESGCGKSTLGRVACGLLDPSDGQVLVNGRD 92 Query: 93 VDPTLRKENAR---HIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRIGSSAEQQKSVRRIL 149 +E A +Q IFQ+PY+SLNPR + +IVG +++ + V + L Sbjct: 93 RASLSSREEAEARLQVQMIFQNPYASLNPRLRIDQIVGEAAQVNG-KVEGDLDDYVCQQL 151 Query: 150 DLVGMPERTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSALDVSVQAQILNLLL 209 G+ +YP+Q SGGQRQR+ IARAL +QP +L+CDE +ALDVS+QAQILNL + Sbjct: 152 LRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQPQMLVCDEAVAALDVSIQAQILNLFM 211 Query: 210 DLKAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFSDAQHPYTRMLLA 267 DL+AE GLTYLFISHDLGVVEH+ DRV +M+ G +VE ++F HPYT+ LLA Sbjct: 212 DLRAELGLTYLFISHDLGVVEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLA 269 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/244 (46%), Positives = 160/244 (65%), Gaps = 8/244 (3%) Query: 29 YALKRGMFKTPGEIRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPT-SGNVL 87 Y +K+G F AV V L+L RGETLG+VGESG GKSTL LL L + +G++ Sbjct: 278 YHIKQGWFAKRA-FHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSAASVAGSIR 336 Query: 88 INGQEVDPTLRKE----NARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRIGSSAEQQK 143 +G + ++E +R +Q +FQDP++SL+PR+TV +IVG L+LH SAEQQ+ Sbjct: 337 FDGVPISERPQRELRPLRSR-MQVVFQDPFASLSPRRTVEQIVGEGLELHHPDRSAEQQR 395 Query: 144 -SVRRILDLVGMPERTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSALDVSVQA 202 ++ L+ VG+ +YP++ SGGQRQR+AIARAL+LQP++L+ DEPTSALDV+VQ Sbjct: 396 QAIVAALEEVGLSAAVLERYPHEFSGGQRQRIAIARALVLQPELLLLDEPTSALDVTVQQ 455 Query: 203 QILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFSDAQHPYT 262 Q+L LL +L+ GL YLFI+HDL VV+ + +V VM G +VE ++ Q YT Sbjct: 456 QVLQLLAELQRRHGLAYLFITHDLAVVQAMAHQVIVMKDGKVVESGATAQVLQQPQQEYT 515 Query: 263 RMLL 266 R L+ Sbjct: 516 RRLV 519 Score = 164 bits (416), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 139/237 (58%), Gaps = 8/237 (3%) Query: 40 GEIRAVSDVSLRLYRGETLGLVGESGCGK--STLAKMLLGLLEPTSGNVLINGQEV---- 93 G+ V VS + GE LVGESG GK S+LA M L G++L++GQ+V Sbjct: 16 GDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQLNQDARYEGSILLDGQDVLAKS 75 Query: 94 DPTLRKENARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRIGSSAEQQKSVRRILDLVG 153 + +++ + IFQ+P ++LNP T+ + L H ++ + + +L+ G Sbjct: 76 ERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMHHEGLNARDAARRAVALLEKTG 135 Query: 154 MPE--RTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSALDVSVQAQILNLLLDL 211 +PE R YP++LSGGQRQR IA AL +P +LI DEPT+ALDV++Q QIL LL L Sbjct: 136 IPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQILALLNQL 195 Query: 212 KAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFSDAQHPYTRMLLAS 268 + E + L ISHDL +V H DRV VM KG +VE + ++F++ Q PYTR LL S Sbjct: 196 QREENMAVLIISHDLNLVRHFADRVGVMEKGKLVESASVAELFANPQQPYTRKLLQS 252 >gi|300310466|ref|YP_003774558.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 645 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 91/233 (39%), Positives = 148/233 (63%), Gaps = 4/233 (1%) Query: 39 PGEIRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEPTSGNVLINGQEVDPTLR 98 PG +R + D++L + RG T+G++GESG GK+TLA+ + G++ P G++ ++G+ + PTL Sbjct: 327 PG-VRILDDINLTIQRGSTVGIIGESGSGKTTLARAVAGMIAPARGSIQLDGETLSPTLE 385 Query: 99 ---KENARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRIGSSAEQQKSVRRILDLVGMP 155 +E R +Q +FQ+ ++LNP ++ I+ PL + ++ +LDLV +P Sbjct: 386 GRTREQFRRVQIVFQNADTALNPSHSIGRILNRPLSFYHGLKGEAMRRRTAELLDLVQLP 445 Query: 156 ERTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPTSALDVSVQAQILNLLLDLKAEF 215 + P +LSGGQ+QRV +ARAL +PD+++CDE TSALD V A IL LL +L+ E Sbjct: 446 ATVIDRLPAELSGGQKQRVNLARALAAKPDLILCDEVTSALDTVVAAAILELLAELRREL 505 Query: 216 GLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKIFSDAQHPYTRMLLAS 268 ++Y+FISHD+ V + D + V++ G +V RE + + HPY+ +LL+S Sbjct: 506 QVSYMFISHDISTVRAICDDIVVLYAGRMVANRPREAMMAPPYHPYSHLLLSS 558 Score = 128 bits (321), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 135/256 (52%), Gaps = 11/256 (4%) Query: 25 LSKIYALKRGMFKTPG-EIRAVSDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLEP-- 81 L ++ L+ K G ++ V +V+ + RGE L L+GESG GK+T+A LLG Sbjct: 28 LVEVQGLRVNARKEDGSQVEIVKNVNFTVARGEVLALIGESGSGKTTIALSLLGYARAGC 87 Query: 82 --TSGNVLINGQEVDPTLRKE----NARHIQPIFQDPYSSLNPRKTVAEIVGLPLKLHRI 135 G V I +++D K H+ I Q ++ NP +T+ + V H + Sbjct: 88 HIAGGQVRIGERQIDQMDEKALLAMRGHHVAYIAQSAAAAFNPARTLMDQVIESALQHGV 147 Query: 136 GSSAEQQKSVRRILDLVGMP--ERTYAQYPNQLSGGQRQRVAIARALILQPDILICDEPT 193 A + + + +P ++ +YP+Q+SGGQ QRV A AL+ P+++I DEPT Sbjct: 148 MDKASAMRKAVELFRALALPNPDKIGERYPHQVSGGQLQRVMAAMALVTGPELVILDEPT 207 Query: 194 SALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMHKGSIVELETREKI 253 +ALDV+ Q ++L ++ E G T +++SHDL VV + DR+ V+ G++ E + ++ Sbjct: 208 TALDVTTQIEVLRAFKNVVKELGTTAVYVSHDLAVVAQMADRIIVLRDGAVRETGSTSQV 267 Query: 254 FSDAQHPYTRMLLASA 269 YT+ LLA+A Sbjct: 268 LHAPADSYTQCLLAAA 283 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 900,672 Number of extensions: 37296 Number of successful extensions: 504 Number of sequences better than 1.0e-08: 127 Number of HSP's gapped: 319 Number of HSP's successfully gapped: 144 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)