BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0037.p (181 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312482|ref|YP_003776574.1| LysR family transcription regul... 279 8e-77 gi|300313657|ref|YP_003777749.1| LysR family transcription regul... 172 2e-44 gi|300313689|ref|YP_003777781.1| LysR family transcription regul... 135 1e-33 gi|300310291|ref|YP_003774383.1| LysR family transcription regul... 87 6e-19 gi|300310159|ref|YP_003774251.1| LysR family transcription regul... 86 2e-18 >gi|300312482|ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 279 bits (714), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 135/166 (81%), Positives = 154/166 (92%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 MKSQ LQDTALRYFLEVVRCGSI+EASQRLNVASSAISRQI SLE++LDTVLFERRPRGM Sbjct: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 VLSAGGEMLAAHA+K+ LEADRVVADL ALKGLRSGR+R++ASEGF IDF+PRLI +FQ+ Sbjct: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 KYP FQ++VG P +VSRQVR+GNADIG+TF RLPEP+IK+VH+Q Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQ 166 >gi|300313657|ref|YP_003777749.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 172 bits (435), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/166 (52%), Positives = 121/166 (72%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 + ++ LQ+TA+RYFLEVVR GSI EA+ LNVASSAISRQI LE LDT LFER RGM Sbjct: 31 IHTRVLQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGM 90 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 +A GE+LAAHA +++LEA+R+ +L ALKGLR G +++A +EGF ++F+P I F + Sbjct: 91 RPNAAGELLAAHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCR 150 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 ++ I+FQ+ VG V++Q+R+G D+G+TF P+ DIK+ Q Sbjct: 151 QHKGIRFQLSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQ 196 >gi|300313689|ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 135 bits (341), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/161 (42%), Positives = 106/161 (65%) Query: 6 LQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAG 65 +Q T+LRYF +V R GS+ A++RL+VA SA+SRQI +EE LFERR RGMVL+ Sbjct: 1 MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPA 60 Query: 66 GEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPAI 125 GE+L A+A++ LE ++V+A++ L + G I +A SEGF D +P + F+++YP + Sbjct: 61 GEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFREQYPGL 120 Query: 126 QFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 QF+++V S+ V DG ADI VT++ P + + +++ Sbjct: 121 QFKLHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRE 161 >gi|300310291|ref|YP_003774383.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 87.4 bits (215), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 2/165 (1%) Query: 6 LQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAG 65 L D + Y E VR GS+ A+ L++A SA+SRQI LE+ L L ER RG+ + Sbjct: 5 LNDHRIAYLYEAVRTGSVRAAADALDIAPSAVSRQISLLEQELAVPLIERHKRGVSPTEA 64 Query: 66 GEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQKYPAI 125 G +L + ++ R V+A L ++GL+ G I + EGF D + I+ F +KYP I Sbjct: 65 GALLLEYYREQRSHQSDVLAKLQEIRGLKRGSINIIMGEGFISDMVSGPIKQFCKKYPEI 124 Query: 126 QFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQXLRR 170 + + V V A+IG+ FN P + KIV + R+ Sbjct: 125 ALVLDLAGTNEVVSAVAADEAEIGLVFN--PPVEAKIVSRAVARQ 167 >gi|300310159|ref|YP_003774251.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 21/166 (12%) Query: 11 LRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGMVLSAGGEMLA 70 LRYFL VV GS+AEA++RL++A A+SRQI+ LEE L LF+R RG L+A G Sbjct: 6 LRYFLGVVEHGSVAEAARRLHIAQPALSRQIKYLEEELGAALFDRSVRGATLTAAG---- 61 Query: 71 AHAQKVRLEADRVVADLLALK--------GLRSGRIRVAASEGFGIDFMPRL---IRSFQ 119 Q++ ++A R++ADL + GL G +R+ + FG + PR+ +R F Sbjct: 62 ---QQLVIDARRMLADLQETRQRVARVAEGL-EGNLRMGITPNFG--WHPRILGSLRHFH 115 Query: 120 QKYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQ 165 Q P I + G ++R G+ D G R P D + H+ Sbjct: 116 QAEPQIAVSLEPGLSARQLERIRSGDLDAGFLAWRYPPNDQFLAHE 161 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 504,738 Number of extensions: 19450 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 39 Length of query: 181 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 102 Effective length of database: 1,245,805 Effective search space: 127072110 Effective search space used: 127072110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)