BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0035.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312490|ref|YP_003776582.1| transcription regulator protein... 157 4e-40 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 143 8e-36 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 106 8e-25 gi|300312760|ref|YP_003776852.1| transcription regulator protein... 100 6e-23 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 97 5e-22 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 157 bits (398), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 76/149 (51%), Positives = 102/149 (68%) Query: 19 TLDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRAL 78 +LDR D+ ILK LQ+D I N LA ++ +SA AC +RL E G +K + A+L+P L Sbjct: 2 SLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKL 61 Query: 79 DAGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRL 138 LV +GVVLDRSTPESF FEKAV+ ++ EC ++ GEFDY++ +R KD +FNRL Sbjct: 62 GLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRL 121 Query: 139 HAEQLLYLPGVRQVRTFMVIKEVLSTTQL 167 HA LL LPGVRQ+R+F V+ EV + +L Sbjct: 122 HANTLLRLPGVRQLRSFFVLNEVKNNPEL 150 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 143 bits (360), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 96/150 (64%) Query: 20 LDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRALD 79 LD+ + IL LQ D ISNV LAARVNLS ACL RV +L+E G I G A LNP LD Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 80 AGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRLH 139 LV I VVLDR+TP+ F F+K+VQ + +ECH+V G FDY + R KD +++ Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 140 AEQLLYLPGVRQVRTFMVIKEVLSTTQLHL 169 + LL L GVR+ T+ V++EV +T +L + Sbjct: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 106 bits (265), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 86/151 (56%) Query: 19 TLDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRAL 78 TLD+ D IL +LQ+D IS L +V LS C+ RV R++ G+I G A +NP +L Sbjct: 10 TLDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESL 69 Query: 79 DAGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRL 138 A LV + + L+ + F F + V ++ ECH+V+G+FDY + R + + +L Sbjct: 70 GATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKL 129 Query: 139 HAEQLLYLPGVRQVRTFMVIKEVLSTTQLHL 169 + LL LPG Q ++++V++E+ T L L Sbjct: 130 LGDILLQLPGAAQSKSYVVMEEIKETLALPL 160 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 100 bits (249), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 76/122 (62%) Query: 17 NDTLDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPR 76 + TLD+ DR +L +LQ+D IS LA ++++S P CLRR+ L+E G+I VA+++P Sbjct: 5 HHTLDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDPF 64 Query: 77 ALDAGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFN 136 AL G L + + L+ + + FE+ + K + ++C+ V+GE+DYF+ V D D++ Sbjct: 65 ALGYGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYY 124 Query: 137 RL 138 + Sbjct: 125 QF 126 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 97.4 bits (241), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/150 (38%), Positives = 83/150 (55%) Query: 20 LDRTDRAILKLLQRDASISNVALAARVNLSAPACLRRVERLKELGLIKGIVALLNPRALD 79 +DR D A+L LQRD I+N AL +V+LS RRV+RL+E +I+ A+L+P + Sbjct: 6 VDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65 Query: 80 AGTLVMIGVVLDRSTPESFTAFEKAVQKVSGCLECHVVTGEFDYFMLVRTKDNDSFNRLH 139 G V LDR FEKAV+ + EC VTGE DY + + D +F+ Sbjct: 66 LGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125 Query: 140 AEQLLYLPGVRQVRTFMVIKEVLSTTQLHL 169 +LL LPGV V++ + +K+V + +L L Sbjct: 126 MTRLLRLPGVTNVKSNITLKKVKQSHELPL 155 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 433,881 Number of extensions: 15353 Number of successful extensions: 61 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 9 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)