BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0030.p
         (289 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar ep...   316   2e-87

>gi|300309778|ref|YP_003773870.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score =  316 bits (809), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/288 (56%), Positives = 197/288 (68%)

Query: 1   MTIIVTGATGTVGRQVVGQLVKRGADVRALVRDPSKANFPAGVDVVQGDLLDVDSLRRAF 60
           M+I+VTGATG VG  VV  L   GA+VRALVR P K   PA V  V GDL +V SLR A 
Sbjct: 1   MSILVTGATGAVGSLVVQGLAAAGAEVRALVRSPGKMALPADVKEVVGDLREVTSLRTAL 60

Query: 61  SGVSTLFLLNGVVPDEYTQALIALNVAREAGIERIVYLSVIHSDLYVNVPHFAGKFGVER 120
            GV TLF+LN V PDE TQAL  LN+A +AGIERIVYLSVIH+D + +VPHF GK  VER
Sbjct: 61  QGVRTLFVLNAVAPDELTQALNVLNLAHQAGIERIVYLSVIHADRFTDVPHFTGKHTVER 120

Query: 121 MIERMGLNATILRPAYFMGNDLTIKDVVTGYGIYPMPIGSKGLAMVDTGDIAEIAAIELI 180
           MIE  GL ATILRPAYFM ND+ +  V++ YG+YPMPIG  G+ M+D  DIA+IA  EL+
Sbjct: 121 MIEGSGLPATILRPAYFMQNDVPLLPVLSSYGVYPMPIGPSGVEMIDVRDIADIAVAELL 180

Query: 181 RRERTAVPLPPDRINIVGPDTLTGADIAAIWTEVLGRPIAYPGDDPAGFEKNLRQFMPSW 240
            R+R   PLP   +++VGP + TGA  AA+W+EVL RPI   GDD   FE+ L    P W
Sbjct: 181 ARDRADKPLPTRTLDLVGPQSFTGAQAAAVWSEVLQRPIQAGGDDLDAFEQQLAAQAPDW 240

Query: 241 MAFDMRLMSERFLTEGMIPEAGDVERLTALLGRPLRSYRDFASGIAAS 288
           MAFD+RLM  +    GM    G V+ L  LLGRPLR+Y+DF   +A +
Sbjct: 241 MAFDLRLMMAQIQRHGMHGRPGAVQVLEGLLGRPLRTYQDFVKELAGA 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 840,813
Number of extensions: 34376
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,222,130
Effective search space: 250536650
Effective search space used: 250536650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)