BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0016.p (393 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine... 199 4e-52 gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine... 134 1e-32 gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine... 94 2e-20 >gi|300312971|ref|YP_003777063.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 415 Score = 199 bits (505), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 122/407 (29%), Positives = 202/407 (49%), Gaps = 19/407 (4%) Query: 4 LEGIRVLDFGRFIAGPFCAALLADFGADVIRIDRVGGSEDRYIVPVTEGGEGAFFLQVNR 63 L GI+VL+ G IAGPFC+ +LA+FGADVI+++ G + V + G ++ R Sbjct: 11 LAGIKVLELGTLIAGPFCSRMLAEFGADVIKVEAPGNGDPLRQWRVLKDGTSLWWSVQAR 70 Query: 64 NKRSLSLDIDSPEGREVVRQLVRTADVVIANMPAKTLESLGLDYESLRQIKPDVILTATS 123 NK+S++L++ +E+ R+L ADV+I N LE L YE L+Q+ P I+ S Sbjct: 71 NKKSITLNMKDERAQEIARKLALEADVIIENYRPGVLEKWKLGYEDLKQLNPATIMVRLS 130 Query: 124 AFGSQPAVRHKTGFDGVGQSMSGAVHMAGLPDH-PMKAMVPVVDFATAMSCAMGTVLALY 182 +G +R GF +G+SM G +++G PD P++ + + D A+ +G ++AL Sbjct: 131 GYGQTGPLRDLPGFGAIGESMGGIRYVSGHPDRPPVRIGISIGDSIAALHGVIGAMMALR 190 Query: 183 ERKTS--------------GLGQEVGASLLRTGLNMSSGALIEEAVLKLDRKASLNRSPN 228 R + G GQ V +L NM + E + R+ + P Sbjct: 191 HRDVTGGRWNGKQGADCVAGQGQMVDVALYEAVFNMMESMVPEFDFAGVVRERTGGALPG 250 Query: 229 YAPSDIFQTLDGW-LIVQVIGEVMFKRWACLMGHPEFAEDLRFRDDKARGEQGEYLCSVM 287 PS+ + T +G +++ G+ +FKR +G + A D + R + E + + + Sbjct: 251 IVPSNTYTTGEGMNIVIAGNGDAIFKRLMSAIGREDMANDPGLARNDGRVPRTEEIDAAI 310 Query: 288 AQWCAGRTRKECLAELEKARIPAGPVYSPREALEDETVNDAESFTWTDYP-GVAGKIPLV 346 QWC+ +T + LA L+ A +P G +YS ++ + D + F + G K+P + Sbjct: 311 QQWCSTQTIETALATLQAADVPVGKIYSVKDMMNDAQFLARDMFEQHQFADGTPVKLPGI 370 Query: 347 SPPISLSRTPSSIDRRAPTSGEHTDDVMQGLGYSAQEIASLRDSGVI 393 +P +S TP P G H+D+++Q LGY I LRD GV+ Sbjct: 371 TP--KMSETPGQTKWLGPELGAHSDEILQSLGYDEAHIKMLRDQGVV 415 >gi|300312108|ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 399 Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 115/403 (28%), Positives = 181/403 (44%), Gaps = 24/403 (5%) Query: 4 LEGIRVLDFGRFIAGPFCAALLADFGADVIRIDRVGGSEDRYIVPVTEGGEGAFFLQVNR 63 LEGI V+ IA PFC LAD GA VI+I+R G + G + F+ NR Sbjct: 8 LEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSSHFVWTNR 67 Query: 64 NKRSLSLDIDSPEGREVVRQLVRTADVVIANMPAKTLESLGLDYESLRQIKPDVILTATS 123 +K SL+L++ EGR ++ QL++ ADV++ N+ LGL ++L P +I+ S Sbjct: 68 SKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPRLIVCDIS 127 Query: 124 AFGSQPAVRHKTGFDGVGQSMSGAVHMAGLPDHPMKAMVPVVDFATAMSCAMGTVLALYE 183 +G R K +D + QS +G + + G PD +KA + D A M + AL + Sbjct: 128 GYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSNILAALIK 187 Query: 184 ---RKTSGLGQEVGASLLRTGLNMSSGAL---IEEAVLKLDRKASLNRSPNYAPSDIFQT 237 G G + S+L + S L + A L A Y P F Sbjct: 188 RGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYGP---FSA 244 Query: 238 LDGWLIVQVIGEVMFKRWAC----LMGHPEFAEDLRFRDDKARGEQGEYLCSVMAQWCAG 293 DG + ++G + W ++ A D RF + R E + L ++ AG Sbjct: 245 GDGKTV--MLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVFAG 302 Query: 294 RTRKECLAELEKARIPAGPVYSPREALEDETVNDAESFTWTDYPGVAGKIPLVSPPISLS 353 + ++ A L++A+I V + +E + + A WT+ GK+ + PP Sbjct: 303 LSAEQVAARLDEAQIANARVNTMQELWQHPQL--AARQRWTEVATPVGKVAALLPP---- 356 Query: 354 RTPSSIDRRA---PTSGEHTDDVMQGLGYSAQEIASLRDSGVI 393 S D R P G+HT+ ++ LGY A +IA+LR+ G + Sbjct: 357 GANDSYDYRMEAIPALGQHTESILSALGYEAGQIAALRERGAV 399 >gi|300310600|ref|YP_003774692.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] Length = 469 Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 97/203 (47%), Gaps = 17/203 (8%) Query: 2 KVLEGIRVLDFGRFIAGPFCAALLADFGADVIRIDRVGGSEDRYIVPVTEGGEGAFFLQV 61 + L GIRVLD R +AGP LA GA+V+RID G E + V G Sbjct: 206 RPLRGIRVLDLTRILAGPVATRFLAGLGAEVLRIDPYGWEEPNTVPEVVLG--------- 256 Query: 62 NRNKRSLSLDIDSPEGREVVRQLVRTADVVIANMPAKTLESLGLDYESLRQIKPDVILTA 121 KR L++ P + +R+L+ AD+++ + L LGLD R++ P +I + Sbjct: 257 ---KRCARLNLKDPADLDTLRRLMGHADILVHGYRSDALAKLGLDAAQRRELNPALIDVS 313 Query: 122 TSAFGSQPAVRHKTGFDGVGQSMSGAVHMAGL----PDHPMKAMVPVVDFATAMSCAMGT 177 A+G A + + GFD + Q MS + AG+ P+ V +D AT A Sbjct: 314 LDAYGWSGAWQCRRGFDSLIQ-MSTGIAEAGMRVMGSAAPVNLPVQAIDHATGYLMAAAA 372 Query: 178 VLALYERKTSGLGQEVGASLLRT 200 + L R T G+G EV ASL RT Sbjct: 373 LRGLTLRMTRGVGIEVRASLART 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,276,343 Number of extensions: 56006 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 3 Length of query: 393 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 306 Effective length of database: 1,207,925 Effective search space: 369625050 Effective search space used: 369625050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)