BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0011.p (398 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 304 1e-83 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 288 6e-79 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 287 9e-79 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 253 3e-68 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 214 1e-56 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 304 bits (778), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 173/407 (42%), Positives = 240/407 (58%), Gaps = 26/407 (6%) Query: 1 MRRAAIVAPIRTPIGGFGGTLRPLFADQLAVTVIRSLIERTGIDPARIDEVIVSQSYANS 60 M IVA RT IG FGG L + A L VI++L+ +TGI P I EVI+ Q Sbjct: 1 MDDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG 60 Query: 61 DAPCLGRYAALAAGLPIEVPGYSVDRRCGSGLQAVIDASQMVQTGAADVVLVAGVESMSN 120 R + + +GLP VP + V + CGSGL+AV A+Q ++ G A +V+ G E+MS Sbjct: 61 LGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 Query: 121 IEYYTTDMRWGARSGSVTLHDRLQRGRERAQPVERFGVISGMLE---------TAENLAK 171 + + R G R G L D + ++ G+ + TAEN+AK Sbjct: 121 SPHVLNNSRDGFRMGDAKLTDTM--------------IVDGLWDVYNQYHMGITAENVAK 166 Query: 172 DYAITREEQDAFAVRSHQRADAAWASGKFADEVIPVHVPQKKGDALVFDRDEGIRAGTDM 231 + I+REEQDAFA S +A+AA +GKF DE++P+ + KK + +VFD DE ++ G Sbjct: 167 KFEISREEQDAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKK-ETVVFDTDEFVKHGVTA 225 Query: 232 AALARLKPVM-RDGTVTAGNSSQQNDAAAACLVVAEDKLAELRLDPMAYLVGWAAAGCDP 290 +LA L+P + GTVTAGN+S ND AAA +V + AEL L +A + +++AG DP Sbjct: 226 ESLATLRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDP 285 Query: 291 ARMGIGPVPAVERLFSRTGLGFDRMDLVELNEAFAAQALAVLKGWSWNDPDRFNVNGSGI 350 + MG+GPVPA + + G +DL+E+NEAFAAQA+AV K W D + NVNG I Sbjct: 286 SIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW-DTSKINVNGGAI 344 Query: 351 SLGHPIGATGVRILTTLLHELSRRKGRYGLETMCIGGGQGLAAIFER 397 +LGHPIGA+G R+L TLLHE+ RR + GL ++CIGGG G+A ER Sbjct: 345 ALGHPIGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 288 bits (737), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 174/402 (43%), Positives = 251/402 (62%), Gaps = 8/402 (1%) Query: 1 MRRAAIVAPIRTPIGGFGGTLRPLFADQLAVTVIRSLIERT-GIDPARIDEVIV-SQSYA 58 M+ I IRTPIG +GG L+ + AD L +R+L+ER +D +D+VI + A Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 59 NSDAPCLGRYAALAAGLPIEVPGYSVDRRCGSGLQAVIDASQMVQTGAADVVLVAGVESM 118 D + R + L AGLP EVPG +++R CGSG+ A+ A++ +++G +++ GVESM Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 119 SNIEYYTTDMRWGARSGSVTLHDRLQRGR-ERAQPVERFGVISGMLETAENLAKDYAITR 177 + + A S + D R A +++GV M ETAEN+A D+ ++R Sbjct: 121 TRAPFVMGKAD-SAFSRQAAIQDTTIGWRFVNALMKQKYGV-DAMPETAENVAVDFKVSR 178 Query: 178 EEQDAFAVRSHQRADAAWASGKFADEVIPVHVPQKKGDALVFDRDEGIRAGTDMAALARL 237 +QD FAVRS +A AA A+G A E++PV +PQKKGD + +DE RA T M ALARL Sbjct: 179 ADQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRA-TSMEALARL 237 Query: 238 KPVMR-DGTVTAGNSSQQNDAAAACLVVAEDKLAELRLDPMAYLVGWAAAGCDPARMGIG 296 K V++ DG+VTAGN+S ND A A L+ + + + + +L P A ++G A AG P MG+G Sbjct: 238 KGVVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMG 297 Query: 297 PVPAVERLFSRTGLGFDRMDLVELNEAFAAQALAVLKGWSWNDPD-RFNVNGSGISLGHP 355 P PA +++ ++ G+ D+MD++ELNEAFA+Q LAVL+ D D R N NG I+LGHP Sbjct: 298 PAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHP 357 Query: 356 IGATGVRILTTLLHELSRRKGRYGLETMCIGGGQGLAAIFER 397 +G +G R++TT ++L R GRY L TMCIG GQG+A + ER Sbjct: 358 LGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIER 399 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 287 bits (735), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 187/403 (46%), Positives = 255/403 (63%), Gaps = 15/403 (3%) Query: 4 AAIVAPIRTPIGGFGGTLRPLFADQLAVTVIRSLIERT-GIDPARIDEVIV-SQSYANSD 61 A I IRTP G +GG L + AD LA IRSL+ER G+D +R+++++ + A D Sbjct: 3 ALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGED 62 Query: 62 APCLGRYAALAAGLPIEVPGYSVDRRCGSGLQAVIDASQMVQTGAADVVLVAGVESMSNI 121 + R A L AGLPI VPG +V+R CGS L AV A++ +++G +++ GVESM+ Sbjct: 63 NRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTRA 122 Query: 122 EYYTTDMRWG-ARSGSV---TLHDRLQRGRERAQPVERFGVISGMLETAENLAKDYAITR 177 + ARS ++ T+ R +AQ +G+ S M ETAEN+A D+ I R Sbjct: 123 PFVMGKAESAFARSAAIFDTTIGWRFVNPLMKAQ----YGIDS-MPETAENVATDFQINR 177 Query: 178 EEQDAFAVRSHQRADAAWASGKFADEVIPVHVPQKKGDALVFDRDEGIRAGTDMAALARL 237 +QDAFA+RS QR AA A+G FA E+ P+ +PQKKGD LV DE R T +A LA+L Sbjct: 178 ADQDAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKL 237 Query: 238 KPVMR-DGTVTAGNSSQQNDAAAACLVVAEDKLAEL-RLDPMAYLVGWAAAGCDPARMGI 295 K V+R DGTVTAGN+S ND A A L++A K A+L RL P A ++G A AG P MG Sbjct: 238 KGVVRPDGTVTAGNASGVNDGACA-LLLASPKAADLYRLKPRARVLGMATAGVAPRIMGF 296 Query: 296 GPVPAVERLFSRTGLGFDRMDLVELNEAFAAQALAVLKGWSW-NDPDRFNVNGSGISLGH 354 GP PAV ++ ++ GL +MD++ELNEAFAAQ LAV++ +D N NG I++GH Sbjct: 297 GPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGH 356 Query: 355 PIGATGVRILTTLLHELSRRKGRYGLETMCIGGGQGLAAIFER 397 P+GA+G R++TT +++L R GRY L TMCIG GQG+A + ER Sbjct: 357 PLGASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIER 399 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 253 bits (645), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 165/413 (39%), Positives = 231/413 (55%), Gaps = 36/413 (8%) Query: 1 MRRAAIVAPIRTPIG----GFGGTLRPLFADQLAVTVIRSLIERT-GIDPARIDEVIVSQ 55 ++ A IVA RTPIG G RP D L V I+S + + G+DP I++ IV Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRP---DDLLVRAIQSAVAQVPGLDPKLIEDAIVGC 61 Query: 56 SYAN-SDAPCLGRYAALAAGLPIEVPGYSVDRRCGSGLQAVIDASQMVQTGAADVVLVAG 114 S+ + + R A L AGLP + G +++R C SG+ A+ A+ ++ G ADV++ AG Sbjct: 62 SFPEGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAG 121 Query: 115 VESMSNIEYYTTDMRWGARSGSVTLHDRLQRGRERAQPVERFGVISGMLETAENLAKDYA 174 ESMS + + H + A E G+ GM TAE +A+ + Sbjct: 122 AESMSMVPM-------------MGFHPSINI---NAFKDENVGMAYGMGLTAEKVAQQWK 165 Query: 175 ITREEQDAFAVRSHQRADAAWASGKFADEVIPVHVPQK-----KGDALVFDR----DEGI 225 ++RE QD F++ SHQ+A AA +G+FADE+ + ++ G+ V R DEG Sbjct: 166 VSREAQDEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGP 225 Query: 226 RAGTDMAALARLKPVMR-DGTVTAGNSSQQNDAAAACLVVAEDKLAELRLDPMAYLVGWA 284 RA +++AALA+LKPV G+VTAGNSSQ +D A A ++V+E L + L P+A V +A Sbjct: 226 RADSNLAALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFA 285 Query: 285 AAGCDPARMGIGPVPAVERLFSRTGLGFDRMDLVELNEAFAAQALAVLKGWSWNDPDRFN 344 G P MGIGP A+ GL D++D +ELNEAFAAQALAV+ DP + N Sbjct: 286 VRGVPPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGL-DPSKVN 344 Query: 345 VNGSGISLGHPIGATGVRILTTLLHELSRRKGRYGLETMCIGGGQGLAAIFER 397 G I+LGHP+GATG T +H L R+ +YG+ TMC+G G G A IFER Sbjct: 345 PMGGAIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFER 397 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/403 (37%), Positives = 218/403 (54%), Gaps = 24/403 (5%) Query: 6 IVAPIRTPIGGFGGTLRPLFADQLAVTVIRSLIERTGIDPARIDEV------IVSQSYAN 59 IV+ RT +G F G L L A L I + ++R + A+I ++ V Q+ Sbjct: 8 IVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQA-GL 66 Query: 60 SDAPCLGRYAALAAGLPIEVPGYSVDRRCGSGLQAVIDASQMVQTGAADVVLVAGVESMS 119 AP R AAL AGLP V ++++ CGS +QAV+ + G+A +V+ G+ESMS Sbjct: 67 GQAPA--RQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMS 124 Query: 120 NIEYYTTDMRWGARSGSVTLHDRLQR-----GRERAQPVERFGVISGMLETAENLAKDYA 174 N Y R G R G HDRL G E A + G + G AE+ A ++ Sbjct: 125 NAPYLLPKARRGYRLG----HDRLLDHMFLDGLEDAYSDQYRGRLMGTF--AEDCASEFG 178 Query: 175 ITREEQDAFAVRSHQRADAAWASGKFADEVIPVHVPQKKGDALVFDRDEGIRAGTDMAAL 234 TR +QDAFAV+S RA A + G F EV+PV V KKG ++V +DEG A ++ + Sbjct: 179 FTRAQQDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKG-SVVISQDEGPMA-VNLERI 236 Query: 235 ARLKPVMR-DGTVTAGNSSQQNDAAAACLVVAEDKLAELRLDPMAYLVGWAAAGCDPARM 293 A LKP DGTVTA NSS +D AAA L++ E + L P+A ++G A+ P + Sbjct: 237 ATLKPAFSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAPEKF 296 Query: 294 GIGPVPAVERLFSRTGLGFDRMDLVELNEAFAAQALAVLKGWSWNDPDRFNVNGSGISLG 353 P+ + ++F++TGL DL E+NEAFA +A + D ++ NV+G +LG Sbjct: 297 PTAPIGVLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDI-DMEKINVHGGACALG 355 Query: 354 HPIGATGVRILTTLLHELSRRKGRYGLETMCIGGGQGLAAIFE 396 HPIGA+G RI+ +LL L R + G+ ++CIGGG+ A E Sbjct: 356 HPIGASGARIIVSLLGALKARGLKTGIASLCIGGGEATAIALE 398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,325,980 Number of extensions: 59234 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 6 Length of query: 398 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 311 Effective length of database: 1,207,925 Effective search space: 375664675 Effective search space used: 375664675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)