BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0007.p (222 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 102 3e-23 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 96 2e-21 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 95 5e-21 gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein... 80 9e-17 gi|300311790|ref|YP_003775882.1| short-chain dehydrogenase/reduc... 80 2e-16 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 102 bits (253), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 91/162 (56%), Gaps = 16/162 (9%) Query: 14 GVVNNAGILRDRIFHKMSEEEWDAVLKVHLYGAY-YMSRACAAHFKEQNSGSMVHMTSTS 72 GVV NAGI RD F M E+WD+VL+ +L G Y ++ + + +G +V + S S Sbjct: 87 GVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMPMVRRRAAGRIVTLASVS 146 Query: 73 GLIGNFGQANYSAAKLGVTALSKSIALDMQKFNVRSNCIAPFAWSRMVSSVPTDTPEQQA 132 GLIGN GQ NYSAAK GV +K++AL++ K ++ NC+AP + TD E A Sbjct: 147 GLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAP-------GLIDTDMTE-DA 198 Query: 133 RVDKIKQMTPAK-------IAPLAVYLASERAAQVNGQVFTV 167 +D+I ++ PA+ +A +L S AA + QV +V Sbjct: 199 PIDEILKLIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISV 240 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 96.3 bits (238), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 14/175 (8%) Query: 1 LFEQAIAAFGRVDGVVNNAGILRDRIFHKMSEEEWDAVLKVHLYGAYYMSRACAAHFKEQ 60 L EQ FG + +VNNAGI +D++ +M +EEWD+V+ +L +SRA + Sbjct: 76 LVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVLRGMMKA 135 Query: 61 NSGSMVHMTSTSGLIGNFGQANYSAAKLGVTALSKSIALDMQKFNVRSNCIAP-FAWSRM 119 +G ++++TS G GN GQ NY+AAK GV +S+++A ++ N+ NC+AP F + M Sbjct: 136 RTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTDM 195 Query: 120 VSSVPTDTPEQQARVDKIKQMTP-------AKIAPLAVYLASERAAQVNGQVFTV 167 ++ EQQ+ I Q P +IA +LAS +AA + G V Sbjct: 196 TRAL----NEQQSAA--ILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNV 244 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 94.7 bits (234), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 3/175 (1%) Query: 2 FEQAIAAFGRVDGVVNNAGILRDRIFHKMSEEEWDAVLKVHLYGAYYMSRACAAHFKEQN 61 FE+ A G VD +VNNAGI RD F KMS+++WDAV+ +L + +++ E+ Sbjct: 72 FEKVRAEIGEVDVLVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVTKQVIEGMCERG 131 Query: 62 SGSMVHMTSTSGLIGNFGQANYSAAKLGVTALSKSIALDMQKFNVRSNCIAP-FAWSRMV 120 G +++++S +G G FGQ NYS AK G+ + ++A ++ V N ++P + + MV Sbjct: 132 FGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSPGYIGTDMV 191 Query: 121 SSVPTDTPEQQARVDKIKQM-TPAKIAPLAVYLASERAAQVNGQVFTVRNNEIFL 174 ++ + E+ +K++ P +IA + ++AS G F++ N +++ Sbjct: 192 RAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSL-NGGLYM 245 >gi|300309846|ref|YP_003773938.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 80.5 bits (197), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 7/171 (4%) Query: 9 FGRVDGVVNNAGILRDRIFHKMSEEEWDAVLKVHLYGAYYMSRACAAHFKEQNSGSMVHM 68 FGR+D +VNNAG+ + +++ +++D +L V L G YMS+A + Q SGS+V + Sbjct: 79 FGRIDILVNNAGVTQPAKLLEITGKDYDRILDVSLRGTLYMSQAVLPAMQAQQSGSIVCI 138 Query: 69 TSTSGLIGN--FGQANYSAAKLGVTALSKSIALDMQKFNVRSNCIAPFAWSRMVSSVPTD 126 +S S G G +YSAAK GV L++++A + +R NCI P S ++ Sbjct: 139 SSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPQGIRVNCITPGLISTDINK-DIL 197 Query: 127 TPEQQARVDKIKQM----TPAKIAPLAVYLASERAAQVNGQVFTVRNNEIF 173 + E++A + + + P + + V+LAS+ + G V + Sbjct: 198 SAEKKAEIAQTIPLGRLGGPDDVGGVCVFLASDLSQYCTGVTLDVNGGMLI 248 >gi|300311790|ref|YP_003775882.1| short-chain dehydrogenase/reductase family protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 5/182 (2%) Query: 1 LFEQAIAAFGRVDGVVNNAGILRDRIFHKMSEEEWDAVLKVHLYGAYYMSRACAAHFKEQ 60 L + AI FG++D +V++AG+ + ++S E+W V ++ G +Y +R H E+ Sbjct: 79 LVDFAIERFGQLDVLVSDAGVFAEGNVTEVSPEDWHRVQATNVNGVFYGAREALPHL-EK 137 Query: 61 NSGSMVHMTSTSGLIGNFGQANYSAAKLGVTALSKSIALDMQKFNVRSNCIAP-FAWSRM 119 G +V++ S SGL ++ + Y+A+K V L++++ALD + VR N + P + M Sbjct: 138 TRGCIVNVASVSGLAADWNLSAYNASKGAVCNLTRAMALDFGRKGVRINAVCPSLTHTAM 197 Query: 120 VSSVPTDTPEQQARVDKI---KQMTPAKIAPLAVYLASERAAQVNGQVFTVRNNEIFLMS 176 + + D P ++I + P +IA + +LAS A+ VNG V + Sbjct: 198 TADMADDPPLLDKFAERIALGRGADPLEIAAVITFLASPDASFVNGVNLPVDGGLMASNG 257 Query: 177 QP 178 QP Sbjct: 258 QP 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.131 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 679,804 Number of extensions: 24878 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 21 Length of query: 222 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 140 Effective length of database: 1,231,600 Effective search space: 172424000 Effective search space used: 172424000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)