BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0005.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit [Her...   236   1e-63

>gi|300312107|ref|YP_003776199.1| citrate lyase beta subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 277

 Score =  236 bits (603), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/266 (51%), Positives = 172/266 (64%), Gaps = 7/266 (2%)

Query: 17  SSYLFVPGNRPERFGKALAAGAGAIIVDLEDAVPAADKSAARDAVAAWLT-PQQPA---- 71
           SSYLFVP NRPER+ KAL +GA A+IVDLEDAV    K AAR+ +A WL  P+  A    
Sbjct: 4   SSYLFVPANRPERYAKALDSGADAVIVDLEDAVARPYKEAARETLARWLAGPEGQASQAR 63

Query: 72  -LVRINAVNTPWFADDLAMCIDRGVAAIVLPKAEERDEIALISDRSRDAIALFPLIESAR 130
             VRINA +T W   DL       VA IVLPKAE+   +  ++   R    L  LIESA 
Sbjct: 64  LWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIESAA 123

Query: 131 GIANVHALATERNVRRLIFGSIDFRLDLGID-GDDADELLYFRSQLVLASRLAQLSAPVD 189
           G+A +  +A    V+RL FGSID +LDLG+  G + +ELL  R ++VLASRLA ++APVD
Sbjct: 124 GLAAMRQIAAAPGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAAPVD 183

Query: 190 GVTTDLQDDVRLTADATRAKRLGFGGKCCIHPRQVDVVNRSFAPTAGEIAWAHKVLSAAQ 249
           GVT    D+  L     RA+RLGFG K CIHPRQV+VV R F P+  E+AWA +V++A +
Sbjct: 184 GVTAGFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMAAVR 243

Query: 250 AAGGAAISLDGEMLDRPVYARAEAIL 275
           A+ G AISL G M+DRP+  +AE  L
Sbjct: 244 ASDGGAISLKGRMIDRPLILQAEKFL 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 756,680
Number of extensions: 27164
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)