BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0003.p
         (274 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312110|ref|YP_003776202.1| hypothetical protein Hsero_2799...   198   4e-52

>gi|300312110|ref|YP_003776202.1| hypothetical protein Hsero_2799
           [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score =  198 bits (503), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/272 (41%), Positives = 147/272 (54%), Gaps = 20/272 (7%)

Query: 1   MAATMNIDTSFKEQDPLPPCWHWLFFNQIDPQSILGEDGHPPRGAXGPRGDFLPPVSLPR 60
           +AAT++        + LPP WHW++F     QS  G DGHP RG       FLPPV LPR
Sbjct: 33  LAATLDGPRQPLAGEGLPPLWHWIYFWNACRQSETGPDGHPLRGG------FLPPVPLPR 86

Query: 61  RMFAGSRLDWRGDLKVGARIEKESTILSVESKSGSSGDMVFVTVRHLYREDSLQLLEEQQ 120
           RM+AG RL +   L +G    K S + S++ K G SG + FVTV H         L E+ 
Sbjct: 87  RMWAGGRLRFMAPLPIGMEASKHSRVASIDVKQGRSGALAFVTVHHTISHAGQTCLTEEH 146

Query: 121 DIVYRDVSSTGEREALALLAERVRQLKGEEFSFVKPAERTQRVQPDPVHLFRYSAATFNG 180
           DIVYRD+              +         +    A  ++R+ PDPV LFRYSA TFNG
Sbjct: 147 DIVYRDLP-------------QAGAAPVPAKAAPTDALWSRRIVPDPVLLFRYSALTFNG 193

Query: 181 HRIHYDHPYATGVEHYPGLVVHGPLLATMLVEFLLREVAPGRALQHFEFRAKRPTFDIGP 240
           HRIHYD  Y TGVE YPGL+VHGPL+AT+L + L R++ P   L+ F+FRA    FD   
Sbjct: 194 HRIHYDRSYVTGVEGYPGLIVHGPLIATLLADLLARQM-PQAVLRAFDFRAVGSLFDTEA 252

Query: 241 FHLHAGAGDENGRIELWSTNNVGEVAVHGWAV 272
           F L      +  R+ LW+ N  GE+A+   A 
Sbjct: 253 FTLCGKPSADGRRVALWAQNERGELAMQAEAT 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 881,882
Number of extensions: 35638
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,222,130
Effective search space: 232204700
Effective search space used: 232204700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)