BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0005.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Her...   566   e-163
gi|300309672|ref|YP_003773764.1| cell division FtsI protein/peni...    67   2e-12

>gi|300313947|ref|YP_003778039.1| cell division protein FtsI
           [Herbaspirillum seropedicae SmR1]
          Length = 656

 Score =  566 bits (1460), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 260/315 (82%), Positives = 294/315 (93%)

Query: 3   SAGGRAVRTLSRTPASPGQNLILSIDIELQKVIEEAFGDRKGALVAIDPATGDILAYVSQ 62
           SA GRAVR+LSRTPA+PG+NLILSIDIELQKV+EEAFGD+KGALVAI+PATGDILAYVSQ
Sbjct: 228 SASGRAVRSLSRTPATPGKNLILSIDIELQKVVEEAFGDQKGALVAINPATGDILAYVSQ 287

Query: 63  PSFDPNVFVEGIDQQTWDELNNSPDRPLINRPLSGTYPPGSTYKPFMALAALELGKRKPT 122
           PS+DPN+FVEGIDQQ+WDELN SPDRPL+NRPLSG Y PGSTYKPFMALAALELGKR+P 
Sbjct: 288 PSYDPNLFVEGIDQQSWDELNKSPDRPLLNRPLSGLYSPGSTYKPFMALAALELGKRRPQ 347

Query: 123 DSIRDPGFFWLGNHKFRDDKEGGHGVVDMYRSIVVSCDTYYYMLANDLGVDAIHDFMKPF 182
           D+IRDPG+F LGNH+FRDDKEGGHGVVDMYRS+VVSCDTYYYMLAND+GV+AIHDFMKPF
Sbjct: 348 DAIRDPGYFILGNHRFRDDKEGGHGVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPF 407

Query: 183 GFGQVTGIDLEHERKGLLPSTTWKRNAYRKPEQRKWYAGETISLGIGQGYNAFTPIQMAH 242
           GFGQ+TGIDLEHE++G+LPST WKR A+RKPEQ++W AG+T+SLGIGQGYN+FTP+Q+A 
Sbjct: 408 GFGQITGIDLEHEKRGILPSTEWKRTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQ 467

Query: 243 ATATLANNGIVMKPHLVKMIEDGVTHGRTVTVPKESYRIPLKQENIDVIKQAMVGVNKEG 302
           ATA LANNG+VMKPHLVK++EDGVTH RT TVPKESYRIP+KQENID IK+AMVGV KEG
Sbjct: 468 ATAILANNGVVMKPHLVKIVEDGVTHERTETVPKESYRIPMKQENIDFIKRAMVGVVKEG 527

Query: 303 TGARVFAGAEYTSAG 317
           TGA  F GA Y S G
Sbjct: 528 TGAAAFRGAPYESGG 542


>gi|300309672|ref|YP_003773764.1| cell division FtsI
           protein/penicillin-binding protein 2 [Herbaspirillum
           seropedicae SmR1]
          Length = 592

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 37/254 (14%)

Query: 20  GQNLILSIDIELQ-------KVIEEAFGDRKGALVAIDPATGDILAYVSQPSFDPNVFVE 72
           G++L LSID ++Q       K   E F  + G ++ +D  TG++LA  + P+++PN    
Sbjct: 238 GRDLTLSIDSKIQYIAFTQLKEAVEKFKAKAGGIIVVDAKTGEVLALANLPTYNPN---- 293

Query: 73  GIDQQTWDELNNSPDRPLINRPLSGTYPPGSTYKPFMALAALELGKRKPTDSIRD-PGFF 131
             D+             L NR ++ T+ PGST KPF    AL+  +  P+   +  PG  
Sbjct: 294 --DRSVLTGAQ------LRNRVVTDTFEPGSTMKPFTVALALDTHRVTPSTVFQTAPGKM 345

Query: 132 WLGNHKFRDDKEGGHGVVDMYRSIVVSCDTYYYMLANDLGVDAIHDFMKPFGFGQVTGID 191
            +G     D     HG + + + I  S +     +A  +  + + +     GFGQ     
Sbjct: 346 TIGTATIGDSH--AHGPLTVAQIIEKSSNIGTAKIALGMPPEEMWEMFTTVGFGQQPKFG 403

Query: 192 LEHERKG-LLPSTTWKRNAYRKPEQRKWYAGETISLGIGQGYNAFTPIQMAHATATLANN 250
                 G + P  +W     R  EQ     G  IS+ +         IQ+AHA    A N
Sbjct: 404 FPGAVAGRVRPYKSW-----RPIEQATMSYGHGISVSL---------IQLAHAYLIFARN 449

Query: 251 GIVMKPHLVKMIED 264
           G ++     K+ + 
Sbjct: 450 GDIIPLSFTKVTDS 463


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,156,826
Number of extensions: 51996
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)